Gene
| Gene Model ID | pfu_aug2.0_904.1_14643 |
|---|---|
| Locus | scaffold904.1 : 36046 ... 42815 : - |
| To GenomeBrowser | scaffold904.1:36046..42815 |
| Genes list of scaffold | scaffold904.1 |
| Synonym | pfu_aug1.0_21288.1_62072 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_904.1_14643.t1 | 3 | 1 | PNMA | 12 | 83 | 7.2e-10 | 38.4 | 4.7e-07 | 0.0012 | 17.9 |
| pfu_aug2.0_904.1_14643.t1 | 3 | 1 | Retrotrans_gag | 19 | 93 | 6.5e-12 | 45.3 | 5.0e-07 | 0.0012 | 18.8 |
| pfu_aug2.0_904.1_14643.t1 | 3 | 2 | PNMA | 202 | 273 | 7.2e-10 | 38.4 | 4.6e-07 | 0.0011 | 18.0 |
| pfu_aug2.0_904.1_14643.t1 | 3 | 2 | Retrotrans_gag | 209 | 283 | 6.5e-12 | 45.3 | 5.0e-07 | 0.0012 | 18.8 |
| pfu_aug2.0_904.1_14643.t1 | 1 | 1 | RVT_1 | 451 | 606 | 1.8e-19 | 69.9 | 1.5e-22 | 3.7e-19 | 68.9 |
| pfu_aug2.0_904.1_14643.t1 | 3 | 3 | PNMA | 458 | 470 | 7.2e-10 | 38.4 | 1.3 | 3200.0 | -3.2 |
| pfu_aug2.0_904.1_14643.t1 | 3 | 3 | Retrotrans_gag | 708 | 753 | 6.5e-12 | 45.3 | 0.047 | 120.0 | 2.8 |
| pfu_aug2.0_904.1_14643.t1 | 1 | 1 | PHD | 926 | 954 | 5.6e-07 | 29.1 | 8.3e-10 | 2.0e-06 | 27.3 |
Transcript
| Transcript ID | pfu_aug2.0_904.1_14643.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_904.1_14643.t1 atgcgttacttccaagtacggaattggacttatgctgaggccagggattacctttgctggtgtttgcaaggaaaggcagc cgaatactatgctacacttttagcgcgcaatcagaatatcgatttcgtagagttactcaacaaactggagaaacgatttg gtggtgtaccacttccagataccgcacaagtacaactgattaattctaaacagaagcctgaggaatctattgaagactgg gctgatagggttgttcagttgtctatacgtgcatatcctgatatggctgaagaatttatgtaccaacaagcaataaagcg catttgtcacgggtgtattggcaaggaagcaggtcagtatgtcgtcaatcaaactttagagtcggtagagagggttattg ataagattaaaagttatcagttaaaccatcaaagcatctttgaaaggacaaggaaagatgtacgagaaatttacgtctct gactcgtcatcagtagctagtgatgatggggatgaaaaacaaattaagtatgacggcaaggatcactggtttggttttaa acataagtttatgcgttacctccaagtacggaattggacttatgctgatgccagggattacctttgttggtgtttgcaag gaaaggcagcggaatactatgctacacttttagcgcgcaatcagaatatcgatttcgtagagttactcaacaaactggag aaacggtttggtggtgtaccacttccagataccgcacaagtacaactgattaattctaaacagaagcctgaggaatctat tgaagactgggctgatagggttgttcagttgtccatacgtgcatatcctgatatggctgaagaatttatgtaccaacaag ccataaagcgtatttgtcacggatgtattgacaaggaagctggtcagacaataaaagatgtacgagaaatttatgtctct gactcgtcatcagtagctagtgatgatggggatgaaaaaccaattaaggttaaacactctatggaaacacaagaaattcc ggagcatttaaaagaactttatcaaaattcatgttctgagctaaatgaaaatcagcagggtttgttgaaaaatcttttga tagattttgctgatattttcttatctcatgaatttgatttggggaacttcacttcgattgaacattcaattgacaccgag aattctcgtccaatcaaacagcgtttccgtagaaccccaacttattttgcaggggaggagaaaaaacatttgggaaaaat gttgaaagcggacgtcgttgaaccttcgatatcagagtgggcttcctctccagttctcattcgaaatcgagatggatcag tgagatggtgcgttgactatcgcgtattgaataaggtcaccaagaaagatgtatttcctttgcccctagtggaggaatgc atagataccctatcaggtaatgtgtggttctctaagctagacgccacttggggctattggcaaatcaaagtgaaagatga agataaatgcaagacagctttcaccaccaaatatggcctttatcaatttaaaaggatgagcttcggcttgacaaatgcgc caagcactttctcaagggtcatgaaccttgtcttgagaggtttacattggaaaactgtattagctttccttgatgacgtg ttggtcttagggcgagacttaagagatcatcttaacaatcttgctgaagttttcctcagattaagacaatatggaatcaa attaaaagctaagaagtgtgacatcttcagacaaggggttgagtacttgggtagaactgttggttgtgaaggtaagaaca agttttgttgggaacaagaacaccaagaggcatttgagaaacttagagatgctgtctgtagtgctccagttttaactatt ccaacaaaaaatgacaggtttatactggatactgatagttcagattttgctattggtgcagaactgcttcaaattcaaaa tggggaggagaagtgtatctcctattgcagtttctctttaacaccagagcaacgcaagtattgcacaacgagaaaagcat tactggcagttgttagatttactaggtattttcgtcactatttgcttgggcgaaattttgatgtccgtactgatcaaagt agcctccaatggctgatgaacttcaaaaacccaactgggcagttagctcggtggttggaggagctcagtcagtattggat gtcaacccatcatcgcccagtaaatcgaagtacaggattcaggccaaacatgcttatgctgggaagggaagttgatatgc ctgttgacttgatctttcctggcccaaagcctgttgattctgttgactatgagagatacctggcagaactatttactcac acacgaactgcacatgaaattgctcgtgacaatctcaaattgacacagtcaatatttaagcgagattatgatcttaaaac tcatatgacgtcctatcaaaaaggtgatgcagtttatgtgttagacacctctgttcctaaaggtaaaactgcaaaactaa ggccacaatggaggggaccaggtttagtcatcagaaaattgacagatttcttgtttgttgttttgttgcgcaggaaactg caaacaataactcatgatagaatgaaaaggtgtcgggacagaaatttaccggtctggttattgagaaagcgtaatgattt gtattccggaaaagaaatcggggagtcgacaaatgagatggtcaaggacaatctgtactgtctttgtcggggccccgatg acggaaggtttatgatccagtgcgatgaatgtagggagtggccccatgaaacatgtcctccagtagcagccctgagaaaa gagcttggaaaagtccaaagaagacaaacactaaaaggacaaataagacaggaagaaggctataagatggcaagaaaatt gaggaactcagaagggatcctgaggaacctgttttag |
|
Protein
| Protein ID | pfu_aug2.0_904.1_14643.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_904.1_14643.t1 MRYFQVRNWTYAEARDYLCWCLQGKAAEYYATLLARNQNIDFVELLNKLEKRFGGVPLPDTAQVQLINSKQKPEESIEDW ADRVVQLSIRAYPDMAEEFMYQQAIKRICHGCIGKEAGQYVVNQTLESVERVIDKIKSYQLNHQSIFERTRKDVREIYVS DSSSVASDDGDEKQIKYDGKDHWFGFKHKFMRYLQVRNWTYADARDYLCWCLQGKAAEYYATLLARNQNIDFVELLNKLE KRFGGVPLPDTAQVQLINSKQKPEESIEDWADRVVQLSIRAYPDMAEEFMYQQAIKRICHGCIDKEAGQTIKDVREIYVS DSSSVASDDGDEKPIKVKHSMETQEIPEHLKELYQNSCSELNENQQGLLKNLLIDFADIFLSHEFDLGNFTSIEHSIDTE NSRPIKQRFRRTPTYFAGEEKKHLGKMLKADVVEPSISEWASSPVLIRNRDGSVRWCVDYRVLNKVTKKDVFPLPLVEEC IDTLSGNVWFSKLDATWGYWQIKVKDEDKCKTAFTTKYGLYQFKRMSFGLTNAPSTFSRVMNLVLRGLHWKTVLAFLDDV LVLGRDLRDHLNNLAEVFLRLRQYGIKLKAKKCDIFRQGVEYLGRTVGCEGKNKFCWEQEHQEAFEKLRDAVCSAPVLTI PTKNDRFILDTDSSDFAIGAELLQIQNGEEKCISYCSFSLTPEQRKYCTTRKALLAVVRFTRYFRHYLLGRNFDVRTDQS SLQWLMNFKNPTGQLARWLEELSQYWMSTHHRPVNRSTGFRPNMLMLGREVDMPVDLIFPGPKPVDSVDYERYLAELFTH TRTAHEIARDNLKLTQSIFKRDYDLKTHMTSYQKGDAVYVLDTSVPKGKTAKLRPQWRGPGLVIRKLTDFLFVVLLRRKL QTITHDRMKRCRDRNLPVWLLRKRNDLYSGKEIGESTNEMVKDNLYCLCRGPDDGRFMIQCDECREWPHETCPPVAALRK ELGKVQRRQTLKGQIRQEEGYKMARKLRNSEGILRNLF |
|