Gene
| Gene Model ID | pfu_aug2.0_904.1_14645 |
|---|---|
| Locus | scaffold904.1 : 48976 ... 52246 : + |
| To GenomeBrowser | scaffold904.1:48976..52246 |
| Genes list of scaffold | scaffold904.1 |
| Synonym | pfu_aug1.0_7169.1_60196 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_904.1_14645.t1 | 2 | 1 | RVT_1 | 189 | 220 | 1.7e-17 | 63.5 | 1.1e-05 | 0.057 | 12.7 |
| pfu_aug2.0_904.1_14645.t1 | 2 | 2 | RVT_1 | 223 | 316 | 1.7e-17 | 63.5 | 1.2e-16 | 5.9e-13 | 48.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_904.1_14645.t1 | gi|700398601|ref|XP_009940054.1| | PREDICTED: LOW QUALITY PROTEIN: RNA-directed DNA polymerase from mobile element jockey-like [Opisthocomus hoazin] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_904.1_14645.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_904.1_14645.t1 atggaaacgagggatggaaagaaatacatagaatatgtgagggccagaaaccagacaaagaaaatagtaaggaaagcaaa aattcaaatggaaaaggaaatcgccaaggacgtgaaaactaacccaaagaaattttggcaatatgcaaattctaagagga aagccaaatcgggtatctctgaactaaaatacacaagtcaggatggagaacaaaaaataaaaatgacatgtagtgacaaa gagaaggcagaggtacttgcaaatttcttcagcagtgtatttacaaaggaacctgagggtgagataccaaatatagagaa agcgacagtcaattctacatggaaggatacacatatcacaaagaaggaggtactcactatacttgaggaccttaatgtca acaggtcatctgggccagatggattgcatcccaaagcaatagaagaaataagggaagtcatcgcagaaccgctaacgatc atgttcaatcagtcactactggaaggaaaagtaccagaggcatggaaattaggaaagattgtagcactgttcaaaaaagg agtgaaatctgatcctgggaattacagacatgttagtctaaccagtgttatctgcaaaataatggacaaacttgtccgaa atagaattgtgcatcacatgaagatttataagctgttcatgaatggacaatcatcatcggtgcatgaggtcacatccggt atcccgcaggggagtgtggtcgggccgatcatgtttgtactctacatccatgacatgccggacatcgttgaagctacaac atatctatttgcagatgataccaagatatatcaacaaactaaaagtaaccagaacaagacacgccttatagaggatcttg acgctccgcaaaaatggtcagatacctggttattgaaatttcatccaaataaatgtaaagtggtatccatatctacaaat gggtcgaaatcataa |
|
Protein
| Protein ID | pfu_aug2.0_904.1_14645.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_904.1_14645.t1 METRDGKKYIEYVRARNQTKKIVRKAKIQMEKEIAKDVKTNPKKFWQYANSKRKAKSGISELKYTSQDGEQKIKMTCSDK EKAEVLANFFSSVFTKEPEGEIPNIEKATVNSTWKDTHITKKEVLTILEDLNVNRSSGPDGLHPKAIEEIREVIAEPLTI MFNQSLLEGKVPEAWKLGKIVALFKKGVKSDPGNYRHVSLTSVICKIMDKLVRNRIVHHMKIYKLFMNGQSSSVHEVTSG IPQGSVVGPIMFVLYIHDMPDIVEATTYLFADDTKIYQQTKSNQNKTRLIEDLDAPQKWSDTWLLKFHPNKCKVVSISTN GSKS |
|