Gene
| Gene Model ID | pfu_aug2.0_91.1_03590 |
|---|---|
| Locus | scaffold91.1 : 225954 ... 230705 : + |
| To GenomeBrowser | scaffold91.1:225954..230705 |
| Genes list of scaffold | scaffold91.1 |
| Synonym | pfu_aug1.0_6626.1_67486 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| heterogeneous nuclear ribonucleoprotein h isoform x2 | GO:0000166 GO:0003723 GO:0030529 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_91.1_03590.t1 | 1 | 1 | RRM_6 | 4 | 56 | 1.1e-08 | 34.8 | 3.5e-12 | 1.7e-08 | 34.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_91.1_03590.t1 | gi|524872436|ref|XP_005092980.1| | PREDICTED: heterogeneous nuclear ribonucleoprotein H-like [Aplysia californica] | 7.0e-23 |
| pfu_aug2.0_91.1_03590.t1 | gi|671033818|ref|XP_008707730.1| | PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X2 [Ursus maritimus] | 2.0e-19 |
| pfu_aug2.0_91.1_03590.t1 | gi|688606158|ref|XP_009293833.1| | PREDICTED: heterogeneous nuclear ribonucleoprotein H1, like isoform X1 [Danio rerio] | 4.0e-19 |
| pfu_aug2.0_91.1_03590.t1 | gi|655883838|ref|XP_008273196.1| | PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X2 [Oryctolagus cuniculus] | 5.0e-19 |
| pfu_aug2.0_91.1_03590.t1 | gi|611974284|ref|XP_007473948.1| | PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X3 [Monodelphis domestica] | 7.0e-19 |
Transcript
| Transcript ID | pfu_aug2.0_91.1_03590.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_91.1_03590.t1 atgcatcaattcttttcaccccttggcgtgactccagtcagagttgagtttgagacaggtccaaatggaaggcccacggg ggaggcaaatgttgattttaagacacatcaagatgccgtagaggccatgcaaaaccacaagaaaaatatggaacacagat atattgagctatttttaaattccacaccaaacctatcagggagatctagctacggatccgggggtggattcggtggtgga ggtggaatgggtggcagaatttgtgacagcgacttcgacagtggagattttaatggaaacggctttggcggtatgggtgg atttggaccaagtggtggaaggatgggaatgggtggcaggatgaatcctaactacacagaattctaa |
|
Protein
| Protein ID | pfu_aug2.0_91.1_03590.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_91.1_03590.t1 MHQFFSPLGVTPVRVEFETGPNGRPTGEANVDFKTHQDAVEAMQNHKKNMEHRYIELFLNSTPNLSGRSSYGSGGGFGGG GGMGGRICDSDFDSGDFNGNGFGGMGGFGPSGGRMGMGGRMNPNYTEF |
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