Gene
| Gene Model ID | pfu_aug2.0_91.1_03597 |
|---|---|
| Locus | scaffold91.1 : 458552 ... 475013 : - |
| To GenomeBrowser | scaffold91.1:458552..475013 |
| Genes list of scaffold | scaffold91.1 |
| Synonym | pfu_aug1.0_26089.1_40609 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| 60s ribosomal protein l7 l12 | GO:0030529 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_91.1_03597.t1 | 2 | 1 | Ribosomal_L12 | 62 | 85 | 4.7e-20 | 71.3 | 0.26 | 760.0 | 0.2 |
| pfu_aug2.0_91.1_03597.t1 | 2 | 2 | Ribosomal_L12 | 120 | 187 | 4.7e-20 | 71.3 | 1.6e-23 | 4.7e-20 | 71.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_91.1_03597.t1 | gi|676428777|ref|XP_009045385.1| | hypothetical protein LOTGIDRAFT_156500 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_91.1_03597.t1 | gi|524872452|ref|XP_005092988.1| | PREDICTED: 39S ribosomal protein L12, mitochondrial-like [Aplysia californica] | 1.96182e-44 |
| pfu_aug2.0_91.1_03597.t1 | gi|675846838|ref|XP_009008979.1| | hypothetical protein HELRODRAFT_63014 [Helobdella robusta] | 3.9937e-43 |
| pfu_aug2.0_91.1_03597.t1 | gi|688544714|ref|XP_009298024.1| | PREDICTED: 39S ribosomal protein L12, mitochondrial isoform X1 [Danio rerio] | 5.99756e-43 |
| pfu_aug2.0_91.1_03597.t1 | gi|665820530|ref|XP_008559170.1| | PREDICTED: 39S ribosomal protein L12, mitochondrial [Microplitis demolitor] | 8.99634e-43 |
Transcript
| Transcript ID | pfu_aug2.0_91.1_03597.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_91.1_03597.t1 atgacccctatggatttatgggtccaaaggtcaagattaaagcgacaagaacggttagctgaaacttgcagttgtggact gtctatacgtaggaggtatggcagcgaggcagggacagcagatatacctcctccacatattgagggtacagacaaagaat attccccaaagatccataatattgtggatgaaatcagcaagttgacgctggtagaagtatgtgacttgaatgagttacta aagaaaactctaaaaatccaagatgcccctgttatggcaatgtctgcaggtgctgtagctgctgcacccaaggaggaaga ggaagaagaggtggcacctgttattacaaagacctcgtttactgtcaaactcactgcatttgatgctgagaagaaaattg cgctaattaaagaactcaaaaatattatacctgatatgaatttagttcaggctaaaaaatttgtagaatccgtacctcaa gttgttaaagatgacctagctaaggacgaagcagataacttaaaaaagaaactagaagaacttggtggtaaagcagaagt agagtga |
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Protein
| Protein ID | pfu_aug2.0_91.1_03597.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_91.1_03597.t1 MTPMDLWVQRSRLKRQERLAETCSCGLSIRRRYGSEAGTADIPPPHIEGTDKEYSPKIHNIVDEISKLTLVEVCDLNELL KKTLKIQDAPVMAMSAGAVAAAPKEEEEEEVAPVITKTSFTVKLTAFDAEKKIALIKELKNIIPDMNLVQAKKFVESVPQ VVKDDLAKDEADNLKKKLEELGGKAEVE |
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