Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_91.1_03597
Locus scaffold91.1 : 458552 ... 475013 : -
To GenomeBrowser scaffold91.1:458552..475013
Genes list of scaffold scaffold91.1
Synonym pfu_aug1.0_26089.1_40609

Manual annotation
Annotation by Blast2GO
Annotation GO
60s ribosomal protein l7 l12 GO:0030529

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_91.1_03597.t1 2 1 Ribosomal_L12 62 85 4.7e-20 71.3 0.26 760.0 0.2
pfu_aug2.0_91.1_03597.t1 2 2 Ribosomal_L12 120 187 4.7e-20 71.3 1.6e-23 4.7e-20 71.3

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_91.1_03597.t1 gi|676428777|ref|XP_009045385.1| hypothetical protein LOTGIDRAFT_156500 [Lottia gigantea] 0.0
pfu_aug2.0_91.1_03597.t1 gi|524872452|ref|XP_005092988.1| PREDICTED: 39S ribosomal protein L12, mitochondrial-like [Aplysia californica] 1.96182e-44
pfu_aug2.0_91.1_03597.t1 gi|675846838|ref|XP_009008979.1| hypothetical protein HELRODRAFT_63014 [Helobdella robusta] 3.9937e-43
pfu_aug2.0_91.1_03597.t1 gi|688544714|ref|XP_009298024.1| PREDICTED: 39S ribosomal protein L12, mitochondrial isoform X1 [Danio rerio] 5.99756e-43
pfu_aug2.0_91.1_03597.t1 gi|665820530|ref|XP_008559170.1| PREDICTED: 39S ribosomal protein L12, mitochondrial [Microplitis demolitor] 8.99634e-43

Transcript
Transcript IDpfu_aug2.0_91.1_03597.t1
Definition-
>pfu_aug2.0_91.1_03597.t1
atgacccctatggatttatgggtccaaaggtcaagattaaagcgacaagaacggttagctgaaacttgcagttgtggact
gtctatacgtaggaggtatggcagcgaggcagggacagcagatatacctcctccacatattgagggtacagacaaagaat
attccccaaagatccataatattgtggatgaaatcagcaagttgacgctggtagaagtatgtgacttgaatgagttacta
aagaaaactctaaaaatccaagatgcccctgttatggcaatgtctgcaggtgctgtagctgctgcacccaaggaggaaga
ggaagaagaggtggcacctgttattacaaagacctcgtttactgtcaaactcactgcatttgatgctgagaagaaaattg
cgctaattaaagaactcaaaaatattatacctgatatgaatttagttcaggctaaaaaatttgtagaatccgtacctcaa
gttgttaaagatgacctagctaaggacgaagcagataacttaaaaaagaaactagaagaacttggtggtaaagcagaagt
agagtga

Protein
Protein IDpfu_aug2.0_91.1_03597.t1
Definition-
>pfu_aug2.0_91.1_03597.t1
MTPMDLWVQRSRLKRQERLAETCSCGLSIRRRYGSEAGTADIPPPHIEGTDKEYSPKIHNIVDEISKLTLVEVCDLNELL
KKTLKIQDAPVMAMSAGAVAAAPKEEEEEEVAPVITKTSFTVKLTAFDAEKKIALIKELKNIIPDMNLVQAKKFVESVPQ
VVKDDLAKDEADNLKKKLEELGGKAEVE

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495