Gene
| Gene Model ID | pfu_aug2.0_922.1_08010 |
|---|---|
| Locus | scaffold922.1 : 38946 ... 50474 : + |
| To GenomeBrowser | scaffold922.1:38946..50474 |
| Genes list of scaffold | scaffold922.1 |
| Synonym | pfu_aug1.0_6469.1_38345 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_922.1_08010.t1 | 3 | 1 | HSP70 | 29 | 88 | 2.0e-35 | 121.8 | 7.9e-08 | 0.0012 | 16.8 |
| pfu_aug2.0_922.1_08010.t1 | 3 | 2 | HSP70 | 131 | 238 | 2.0e-35 | 121.8 | 1.9e-26 | 2.8e-22 | 78.3 |
| pfu_aug2.0_922.1_08010.t1 | 3 | 3 | HSP70 | 258 | 328 | 2.0e-35 | 121.8 | 8.4e-11 | 1.3e-06 | 26.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_922.1_08010.t1 | gi|641802575|ref|XP_008163812.1| | PREDICTED: hypoxia up-regulated protein 1 isoform X4 [Chrysemys picta bellii] | 0.0 |
| pfu_aug2.0_922.1_08010.t1 | gi|641802573|ref|XP_008163811.1| | PREDICTED: hypoxia up-regulated protein 1 isoform X3 [Chrysemys picta bellii] | 0.0 |
| pfu_aug2.0_922.1_08010.t1 | gi|641802569|ref|XP_008163809.1| | PREDICTED: hypoxia up-regulated protein 1 isoform X1 [Chrysemys picta bellii] | 0.0 |
| pfu_aug2.0_922.1_08010.t1 | gi|641802571|ref|XP_008163810.1| | PREDICTED: hypoxia up-regulated protein 1 isoform X2 [Chrysemys picta bellii] | 0.0 |
| pfu_aug2.0_922.1_08010.t1 | gi|564255872|ref|XP_006266906.1| | PREDICTED: hypoxia up-regulated protein 1 [Alligator mississippiensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_922.1_08010.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_922.1_08010.t1 atgtcgccacataaaaatgttgcagtgtttgcaacatgccttgtcagtatgatgcatgttgcaatggcacacaatttggc tgtgatgtccatagacttggggagtgaattcatgaaaattgccatcgtcaagcctggagtaccaatggagattgtcctga atgaagaatcatcacggaaaacctctacaatcgtagcgatgagggacggagagagaatgtttatgtcttctgcggagaac acggcagtcaagtttccaaagaaggcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttggtatctgacccagattg ttggaaaacgttttgatgacccagatgtcgttcagtatcgacagagatttccgtactatgatataatcaaggatgaagag agagggacaccaattttcagagtcgatgatgagacaagctatactccagaggagttacttgcgatggtgttggagaaagc caaggtgtcagccgaggtttttgctgagaactccataacagatgccgtcattaccgtgccggtatttttcacccaatcag agcgtaaggcaatattagatgctgctgagatgattaaccttaacgtgctacagataatcagtgataatgcggcaggatac catatagtaaagacgaaggaaggtgaaagggtggagtctaaccctcagctggtcatcaagggggtgggatttgacaggtc actaggtggcctagagatgaccttgagactgcgagatcatttagcaaagctattcaacaagcaaaaactgactaagaccg atgtcttcaccaatgaaagaagcatgggaaaactatttaaggaagcaaatagacttaaaaaagttcttagtgcaaacaca gaccacatggcacagctgagcaatgctaccaggttgagggtcttttggaggacatag |
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Protein
| Protein ID | pfu_aug2.0_922.1_08010.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_922.1_08010.t1 MSPHKNVAVFATCLVSMMHVAMAHNLAVMSIDLGSEFMKIAIVKPGVPMEIVLNEESSRKTSTIVAMRDGERMFMSSAEN TAVKFPKKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWYLTQIVGKRFDDPDVVQYRQRFPYYDIIKDEE RGTPIFRVDDETSYTPEELLAMVLEKAKVSAEVFAENSITDAVITVPVFFTQSERKAILDAAEMINLNVLQIISDNAAGY HIVKTKEGERVESNPQLVIKGVGFDRSLGGLEMTLRLRDHLAKLFNKQKLTKTDVFTNERSMGKLFKEANRLKKVLSANT DHMAQLSNATRLRVFWRT |
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