Gene
| Gene Model ID | pfu_aug2.0_923.1_11313 |
|---|---|
| Locus | scaffold923.1 : 205288 ... 212712 : - |
| To GenomeBrowser | scaffold923.1:205288..212712 |
| Genes list of scaffold | scaffold923.1 |
| Synonym | pfu_aug1.0_227322.1_64846 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| trna (uracil-5-)-methyltransferase homolog a | GO:0003676 GO:0016070 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_923.1_11313.t1 | 1 | 1 | Methyltransf_31 | 24 | 93 | 1.2e-08 | 34.6 | 9.9e-12 | 1.6e-08 | 34.2 |
| pfu_aug2.0_923.1_11313.t1 | 1 | 1 | tRNA_U5-meth_tr | 36 | 157 | 5.1e-10 | 38.5 | 1.8e-12 | 2.9e-09 | 36.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_923.1_11313.t1 | gi|676466866|ref|XP_009057705.1| | hypothetical protein LOTGIDRAFT_121926 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_923.1_11313.t1 | gi|557296729|ref|XP_006030711.1| | PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A [Alligator sinensis] | 0.0 |
| pfu_aug2.0_923.1_11313.t1 | gi|126324739|ref|XP_001376871.1| | PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A isoform X1 [Monodelphis domestica] | 0.0 |
| pfu_aug2.0_923.1_11313.t1 | gi|556958958|ref|XP_005990278.1| | PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A isoform X1 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_923.1_11313.t1 | gi|617649549|ref|XP_007533460.1| | PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A [Erinaceus europaeus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_923.1_11313.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_923.1_11313.t1 atgtacaatgatactggtagatatttcagtgaaatcactgtgtgccccgtatacatgtacatgagagtatcccatgttat aggcatagataactgtgaacaagcaatagaagatgccagagagaatgctaaactaaatggtgtggaaaatgtgacatatc actgctgtaatgtggagaaaataataaatcagatcctgaaatctctgcaatctcgagatgtggtggcagtggtggatccc cctagagcaggtctacatcagaaagttatccgagccctgaggacctgtccattgttgacacgagttgtgtatgtttcatg taatcctacagcagccaaaaacaactttctggatttagtacgtacaccatccagacataacaaaggcgagccatacaggc ctgtgagagcagtccctgtggatatgttccctcaaactaagcactgtgaactagtcgtactgtttgaaagagagcttccc agtgaccttggaaacagtgaccttgacccagctggtcaacaagcagaagaagatgagggaaatgaaaagactggtaatga caaacaagataatgataataatgatgacaataaagataatgataacagtgatgacaatgataaacatgattacaatgaca acgatgatgaggaagacatttga |
|
Protein
| Protein ID | pfu_aug2.0_923.1_11313.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_923.1_11313.t1 MYNDTGRYFSEITVCPVYMYMRVSHVIGIDNCEQAIEDARENAKLNGVENVTYHCCNVEKIINQILKSLQSRDVVAVVDP PRAGLHQKVIRALRTCPLLTRVVYVSCNPTAAKNNFLDLVRTPSRHNKGEPYRPVRAVPVDMFPQTKHCELVVLFERELP SDLGNSDLDPAGQQAEEDEGNEKTGNDKQDNDNNDDNKDNDNSDDNDKHDYNDNDDEEDI |
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