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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_925.1_17942
Locus scaffold925.1 : 109246 ... 153193 : +
To GenomeBrowser scaffold925.1:109246..153193
Genes list of scaffold scaffold925.1
Synonym pfu_aug1.0_1478.1_37028

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_925.1_17942.t1 2 1 EF-hand_7 169 219 7.7e-15 54.7 5.4e-09 8.0e-06 25.8
pfu_aug2.0_925.1_17942.t1 2 1 EF-hand_8 172 220 7.3e-17 60.7 1.5e-10 2.2e-07 30.3
pfu_aug2.0_925.1_17942.t1 2 1 STAT_bind 172 217 1.2e-06 28.3 4.2e-05 0.063 12.8
pfu_aug2.0_925.1_17942.t1 2 1 EF-hand_4 180 223 2.0e-06 27.4 9.4e-05 0.14 11.9
pfu_aug2.0_925.1_17942.t1 3 1 EF-hand_1 195 219 4.7e-09 34.9 2.5e-06 0.0037 16.4
pfu_aug2.0_925.1_17942.t1 3 1 EF-hand_6 195 219 6.6e-07 28.6 2.9e-05 0.044 13.6
pfu_aug2.0_925.1_17942.t1 9 1 WD40 308 334 2.4e-31 106.4 0.0043 6.4 6.8
pfu_aug2.0_925.1_17942.t1 5 1 Nucleoporin_N 319 336 4.7e-08 32.2 0.99 1500.0 -2.4
pfu_aug2.0_925.1_17942.t1 2 2 EF-hand_7 476 526 7.7e-15 54.7 5.4e-09 8.0e-06 25.8
pfu_aug2.0_925.1_17942.t1 2 2 EF-hand_8 479 527 7.3e-17 60.7 1.5e-10 2.2e-07 30.3
pfu_aug2.0_925.1_17942.t1 2 2 STAT_bind 479 524 1.2e-06 28.3 4.2e-05 0.063 12.8
pfu_aug2.0_925.1_17942.t1 2 2 EF-hand_4 487 530 2.0e-06 27.4 9.4e-05 0.14 11.9
pfu_aug2.0_925.1_17942.t1 3 2 EF-hand_1 502 526 4.7e-09 34.9 2.5e-06 0.0037 16.4
pfu_aug2.0_925.1_17942.t1 3 2 EF-hand_6 502 526 6.6e-07 28.6 2.9e-05 0.044 13.6
pfu_aug2.0_925.1_17942.t1 9 2 WD40 615 641 2.4e-31 106.4 0.0043 6.4 6.8
pfu_aug2.0_925.1_17942.t1 5 2 Nucleoporin_N 626 643 4.7e-08 32.2 0.99 1500.0 -2.4
pfu_aug2.0_925.1_17942.t1 5 3 Nucleoporin_N 766 816 4.7e-08 32.2 0.92 1400.0 -2.3
pfu_aug2.0_925.1_17942.t1 9 3 WD40 788 816 2.4e-31 106.4 3.1e-06 0.0046 16.7
pfu_aug2.0_925.1_17942.t1 9 4 WD40 824 859 2.4e-31 106.4 0.0058 8.5 6.4
pfu_aug2.0_925.1_17942.t1 5 4 Nucleoporin_N 936 1008 4.7e-08 32.2 1.1e-06 0.0016 17.2
pfu_aug2.0_925.1_17942.t1 9 5 WD40 940 955 2.4e-31 106.4 0.42 620.0 0.5
pfu_aug2.0_925.1_17942.t1 9 6 WD40 971 999 2.4e-31 106.4 1.2e-08 1.8e-05 24.4
pfu_aug2.0_925.1_17942.t1 9 7 WD40 1063 1091 2.4e-31 106.4 1.9e-06 0.0028 17.4
pfu_aug2.0_925.1_17942.t1 5 5 Nucleoporin_N 1214 1248 4.7e-08 32.2 2.3e-05 0.034 12.8
pfu_aug2.0_925.1_17942.t1 9 8 WD40 1220 1245 2.4e-31 106.4 0.55 820.0 0.1
pfu_aug2.0_925.1_17942.t1 9 9 WD40 1265 1302 2.4e-31 106.4 1.4e-07 0.00021 21.0
pfu_aug2.0_925.1_17942.t1 3 3 EF-hand_6 1386 1393 6.6e-07 28.6 9.1 14000.0 -3.5
pfu_aug2.0_925.1_17942.t1 3 3 EF-hand_1 1387 1393 4.7e-09 34.9 3.5 5200.0 -2.8

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_925.1_17942.t1 gi|390340083|ref|XP_003725163.1| PREDICTED: WD repeat-containing protein on Y chromosome [Strongylocentrotus purpuratus] 0.0
pfu_aug2.0_925.1_17942.t1 gi|390354187|ref|XP_003728270.1| 0.0
pfu_aug2.0_925.1_17942.t1 gi|524912554|ref|XP_005111123.1| PREDICTED: uncharacterized protein LOC101845966 [Aplysia californica] 0.0
pfu_aug2.0_925.1_17942.t1 gi|573895405|ref|XP_006635450.1| PREDICTED: WD repeat-containing protein 49-like [Lepisosteus oculatus] 0.0
pfu_aug2.0_925.1_17942.t1 gi|512880333|ref|XP_002937050.2| 0.0

Transcript
Transcript IDpfu_aug2.0_925.1_17942.t1
Definition-
>pfu_aug2.0_925.1_17942.t1
atggctaacgacacaaatgcagtaaaacttgaaacttctctgccgatatacagaggattagcgtctcagccgacggcgga
gggcgagaggagatcctcttttccattcctacctacctttgatcaccaggaggaggaagtcgagggcagggggctgaaat
ctgcccccgaatttgtcaggtcaagtgacgaatcttcgatagatggcgttgaatctgaggacaatacttctgaagatgac
cttgagaataattcagtgaggtcaaggtcgtttgcaatatacagaaagatcaagaaagaatttgagcggcgaaggagatc
ttttcgagatggtgattctgatgacgaaggaaactttggtgacaaagataaaacccttcgtctcgaggagcagatcaagc
ttgaccatctaaaacagctgatggacgagttcctgaaccataagcccccggacatcgtcaaacaggcggggtcagcctac
ttccctgccaagacagagaaacgcacccccggggccatgaacatggaggagttcaaatcaacggtggccaaagttctcaa
gacagaggagtatgatgaatatttagaaaagttgttcaacaagttggacacttctctggatggatatgtggattggaatg
aattttgtacctatatgttattactgtacagagaaaatgactacatgaggaccaaaagggaaatccccttcttgtctgaa
ccaaaaataagacatattgaccatacaaagcaagaacaaacaacgaaaatagttgccaccgcaaatccactacgctatgt
cacagttagtaaggagggtgtaatcaatgtatggttacctagtttgaactacatagagaagtattacgttgtttctgacg
aggattcggatcaaaccggtcagaagagacggtttaagatgtgggtgacggacgccatctttctacctaactgtaacaaa
ctcgttataggatcaactagtcgtgatatccgattctacgattgctcaacagccaattactttgaagagtttcagctttt
tgctatgtctgacgtcccatactgttttgactattggtatgatgtcaagaatcccagcagaccctctaagctgttctttg
gtgtagatacaggatacatccatacattacacttcaagaaaccagtgtctcaactgtttgaaaccccattcaaaaatgaa
gaaggagttcaaaaaatattttggacatggcagattcaggggggtgcggagggggcgtcngaatgtcaatattgcttcgg
tgacaaggataaaacccttcgtctcgaggagcagatcaagcttgaccacctgaaacaactcatggatgaattcctgaacc
ataaacccccggacatcgtcaaacaggcggggtcagcctacttccccgccaagacagagaaacgcaccccaggggccatg
aacatggaggagttcaaatcaacggtggccaaagttctcaagacagaggaatatgatgaatatttagaaaagcttttcaa
caagttggacacttctttggatgggtacgtggactggaacgagttttgtacttatatgttattgctgtatagagagaacg
actacatgaggaccaaaagggaaatccccttcttgtctgaaccaaaaataagacatatagaccatacaaagcaagaacaa
acaacgaaaattgtagccactgcaaatccactacgttatgtcacagttagtaaggaaggtgttatcaatgtatggttacc
tagtttgaattacatagagaagtattacgtcgtttctgacgaggattcggatcaaaccggccagaagagacggtttaaga
tgtgggtgacggacgccatctttctacctaactgtaacaaactcgttataggatcaactagtcgagatatccgattctac
gattgctcaacagcaaactactttgaagagtttcagttgtttgctatgtctgacgtcccatactgttttgactactggta
tgatgttaagaatcccagcagaccctctaagctgttctttggtgtagatacaggatacatccatacattacacttcaaga
aaccagtttctcaactatttgaaactccgttcaaaaatgaggaaggagtgcaaaaaatattttggacagacatagagaaa
gggaatcatgagagctacgtcacccatgaaaaaatcctacacggagaaatgtcgttttcctcgttaccagacatagtaaa
gcaagtcatgtatctacctgagaacgagtacattatatcgtcaactagcagccccaaacaatcactagtcatctcccctt
gtgataagaaggacttcaagaagtcttatatatttgatatagaaaagggtatagagtcgttcgactacaacaagaattta
aacattttggtgaccggtagcttagaccacctagtcaggatctggaacccttacgtcactaataaagccatggcaatttt
ggaggggcacgccacgggggtaataggggtcattatacatgaggggctcatacaggtgttcagctactctaaagatgctg
ttgtcaaagtatgggacattaaggagcacacctgtctacaaacaatcgtattaaagtttccgagcagtattcacggcaga
atgccggagcatggtcagtttccgatgcatctccaaccctctccccacgatactcttctagtcacttgtaacgatcatgt
tggcatgctcaaactaggtcatacgtcacaaccaaagatgctggaggccgtaacgcacgatactcaactttgtagtgcca
tctacaacaaattatttaatcaaattgtaacaggatgtgattcgtctaacgtagcagtatgggagctggagagtggtaat
aaatctattgtcttctctaacactcacggagacgaggaaatcacgtgtatggcgtttgatcagacgtataggaggttgtt
tactggtgcacggaatggaacaataaaggtatggaatttccaaaatggacataatctacataagttagagccggtatcgg
aagcagaaattacaggaatattgccgtactttgatcgtaagatgattctggcggtcggatggggcagaaaactcatcaga
tacgatgactctgatcctgataacatgtacatacctgcacagttagattggaaaggaggccaaatccatcaggatgacat
cctggccatggattttgctctgccgaactatcttgccacggctgggtttgatggggagatagtggtctgggatatagaga
cggagaaaatctttatcagactacgcaaaggacaacaggctgatatttctaagaagatagaggagattcaagcccaaaca
agttttattagtgtacagagtacagaatccatacacaaagttaacggagatagtaagccagtcacaccctctaggttatc
tagaccaaactctcgtcatcgaaaatctcataaaattccaaaaggtcagcctgctccagtagagaagttattatttttac
ctaaacgtctttcatctcgtatttctgacggtgcaatgttaatctccagtgaagcaggataccttaaatggtggtgtctg
tttggtgctaagaaagaagttggttacttttatgtaccagataccaaggatgagtcagtactgggtctatgttcagattc
tgagaaccaggaactttatacaggggatacccaggggcagatccaggtgtgggatatatcaaattactgtatgtgtgctg
aagaaaggcgcatcaagacaaagccacctctaataagaacgtggaaagctcacgattccagcatcgtcagtctggagtat
atagaacatgagacagggaattatatcgtgagtgcgtccacagattttacggccaggctatggtcagtggagggtgaata
cgtgggaacttttggtcagaaaaagtcttggaatctgaagcagaagtcaacatggatgcatccaaggactccctggtcaa
ctaaatctgttatatcaacagatgacagtaaaaatgaaagaaaagacagtagagcagattctgcatctggtttcaaaacg
cctggagctgataaagatgatgttaccatggcaacaaaagacagtgaccaatcaaatggtgtgataacaaatggaaaatt
agacaaagacaaaactgggtcatcaaagcatgggacagaaagcaggatcagtaaggatgggacaaaagaagagattacag
tcagagaaagttctcgcttagagaaatctgaaaaatcattcgtttcaaaagaagaggactccaagattggggagacaggt
gctggtaaccatggtgatgggttagagggtatagatcctgacctacttcttaaatgtaggtcacagacatttgccttagg
ctcactggaaaggtccaagacatttttaggctctaaggtagcagaacagctgcgaaccattaaagaatcgagaatagaga
gacgtcacagactgagtcaagacgtcaactttaaagatacacaaagatttggtaaaatctgctcaccataccaagctctg
aagacgaaggatgttgaagagatcaaactcccgtcaaagatgcccctcagccagagaatgattaacaagggttacacatc
agataatatgacgcaggaaaaattacttagtatggacttctcttacgttagctccgattctccgctaccaaacgatcaaa
ccagcaaggatcgtgaaaaagtgacagaaaaagtcaggactgctggcacacacaggcgtgctaatagtagacagaattta
gtgaaaaagagcaacactgtagcatga

Protein
Protein IDpfu_aug2.0_925.1_17942.t1
Definition-
>pfu_aug2.0_925.1_17942.t1
MANDTNAVKLETSLPIYRGLASQPTAEGERRSSFPFLPTFDHQEEEVEGRGLKSAPEFVRSSDESSIDGVESEDNTSEDD
LENNSVRSRSFAIYRKIKKEFERRRRSFRDGDSDDEGNFGDKDKTLRLEEQIKLDHLKQLMDEFLNHKPPDIVKQAGSAY
FPAKTEKRTPGAMNMEEFKSTVAKVLKTEEYDEYLEKLFNKLDTSLDGYVDWNEFCTYMLLLYRENDYMRTKREIPFLSE
PKIRHIDHTKQEQTTKIVATANPLRYVTVSKEGVINVWLPSLNYIEKYYVVSDEDSDQTGQKRRFKMWVTDAIFLPNCNK
LVIGSTSRDIRFYDCSTANYFEEFQLFAMSDVPYCFDYWYDVKNPSRPSKLFFGVDTGYIHTLHFKKPVSQLFETPFKNE
EGVQKIFWTWQIQGGAEGAXECQYCFGDKDKTLRLEEQIKLDHLKQLMDEFLNHKPPDIVKQAGSAYFPAKTEKRTPGAM
NMEEFKSTVAKVLKTEEYDEYLEKLFNKLDTSLDGYVDWNEFCTYMLLLYRENDYMRTKREIPFLSEPKIRHIDHTKQEQ
TTKIVATANPLRYVTVSKEGVINVWLPSLNYIEKYYVVSDEDSDQTGQKRRFKMWVTDAIFLPNCNKLVIGSTSRDIRFY
DCSTANYFEEFQLFAMSDVPYCFDYWYDVKNPSRPSKLFFGVDTGYIHTLHFKKPVSQLFETPFKNEEGVQKIFWTDIEK
GNHESYVTHEKILHGEMSFSSLPDIVKQVMYLPENEYIISSTSSPKQSLVISPCDKKDFKKSYIFDIEKGIESFDYNKNL
NILVTGSLDHLVRIWNPYVTNKAMAILEGHATGVIGVIIHEGLIQVFSYSKDAVVKVWDIKEHTCLQTIVLKFPSSIHGR
MPEHGQFPMHLQPSPHDTLLVTCNDHVGMLKLGHTSQPKMLEAVTHDTQLCSAIYNKLFNQIVTGCDSSNVAVWELESGN
KSIVFSNTHGDEEITCMAFDQTYRRLFTGARNGTIKVWNFQNGHNLHKLEPVSEAEITGILPYFDRKMILAVGWGRKLIR
YDDSDPDNMYIPAQLDWKGGQIHQDDILAMDFALPNYLATAGFDGEIVVWDIETEKIFIRLRKGQQADISKKIEEIQAQT
SFISVQSTESIHKVNGDSKPVTPSRLSRPNSRHRKSHKIPKGQPAPVEKLLFLPKRLSSRISDGAMLISSEAGYLKWWCL
FGAKKEVGYFYVPDTKDESVLGLCSDSENQELYTGDTQGQIQVWDISNYCMCAEERRIKTKPPLIRTWKAHDSSIVSLEY
IEHETGNYIVSASTDFTARLWSVEGEYVGTFGQKKSWNLKQKSTWMHPRTPWSTKSVISTDDSKNERKDSRADSASGFKT
PGADKDDVTMATKDSDQSNGVITNGKLDKDKTGSSKHGTESRISKDGTKEEITVRESSRLEKSEKSFVSKEEDSKIGETG
AGNHGDGLEGIDPDLLLKCRSQTFALGSLERSKTFLGSKVAEQLRTIKESRIERRHRLSQDVNFKDTQRFGKICSPYQAL
KTKDVEEIKLPSKMPLSQRMINKGYTSDNMTQEKLLSMDFSYVSSDSPLPNDQTSKDREKVTEKVRTAGTHRRANSRQNL
VKKSNTVA

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