Gene
| Gene Model ID | pfu_aug2.0_93.1_10263 |
|---|---|
| Locus | scaffold93.1 : 493931 ... 524962 : + |
| To GenomeBrowser | scaffold93.1:493931..524962 |
| Genes list of scaffold | scaffold93.1 |
| Synonym | pfu_aug1.0_16642.1_61633 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| swi snf complex subunit smarcc2 isoform x3 | GO:0000790 GO:0000978 GO:0000980 GO:0003713 GO:0005654 GO:0006337 GO:0006357 GO:0007399 GO:0016514 GO:0017053 GO:0031492 GO:0043044 GO:0045892 GO:0045893 GO:0071564 GO:0071565 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_93.1_10263.t2 | 1 | 1 | SWIRM | 466 | 553 | 2.2e-33 | 114.2 | 2.1e-36 | 6.4e-33 | 112.7 |
| pfu_aug2.0_93.1_10263.t2 | 1 | 1 | Myb_DNA-binding | 643 | 684 | 2.1e-08 | 34.1 | 1.8e-11 | 5.4e-08 | 32.7 |
| pfu_aug2.0_93.1_10263.t2 | 1 | 1 | Myb_DNA-bind_6 | 644 | 685 | 5.3e-08 | 32.8 | 6.2e-11 | 1.8e-07 | 31.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_93.1_10263.t2 | gi|759165511|ref|XP_011373990.1| | PREDICTED: SWI/SNF complex subunit SMARCC2 isoform X3 [Pteropus vampyrus] | 0.0 |
| pfu_aug2.0_93.1_10263.t2 | gi|586457512|ref|XP_006859483.1| | PREDICTED: SWI/SNF complex subunit SMARCC2 isoform X2 [Chrysochloris asiatica] | 0.0 |
| pfu_aug2.0_93.1_10263.t2 | gi|21237805|ref|NP_003066.2| | SWI/SNF complex subunit SMARCC2 isoform a [Homo sapiens] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_93.1_10263.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_93.1_10263.t1 atgcgatgtttcttggacttcaaatctggcggagcactttgtcatattttagcagccgtctacaaattcaaaagtgacca aggatggagacggtttgatttccagtccccgtcacggatggacagaaatgtagagatgtttttacagatagagaaatcac tgatacagaacaagtgtcacacccctccctccatatatctaacctccgacatagataaaactctcattcctaagttaaaa gatattgtaaagcgccatcaagggacaatctgtgatgatgaagaggaggcaactcatgttatacatcctctcccacctaa aggatctgatgaagaggattatgtgaagccagttatgaagagggataagtttactatcatacattggtgttactatccgg acagctatgacacctgcgtcagtgacctacatgttgatgtagagggtgattcccccaatcatcagggaccatttgaggtg acagcgagatggttacttgacttggaggaattcaacgaatggatgaacgaagaagattactccgtggatgaggagtttga ttctaagaaaggcaagaaagtcaagacatcaaagatgacggtagatgagttacttgcaattcatgatgaaaggaaagaaa aacgagataaaaaaggcaaaaaaaggaatcgatcaccgtcaccatcacccgtacctacgtctgaaaagaaaaaaaggaaa agcacacgtacgcaggcagctcctggatcgagtagtaagaaacgcccaattaaagacgaggacgaggaggatttgacgag ggacatggatgatccgtcacctgacaccaacatacaggaagtacaacttgcaaaacaatccagcagttcccgtagtaaca aggatacagagaatcagcctgtcaaaggtggaacgataatggacctggacgaggacacaaatgataagtttaacggtgag gataaaggcgatgtagaggacacagtcgaggaagataaaaaagacaaagaagaagaagataacgtaacagagcagacaca tcacatcattatacccagctactcggcgtggtttgattataacgccatacacgctatagagagacgggcactgccggagt tctttaacgggaaaaacaagtcaaaaaccccagagatctactcggcctacagaaacttcatcctggatacataccgtcta aatcccacagagtacctgaccagtacggcgtgtagacgtaatctggccggggacgtttgtgcaataatgagagttcatgc tttcctagaacagtggggcttagtgaattaccaggtagatgctgataacaggccgacgcccatgggccccccacccacct cacacttccatattatggcagacacaccctctggtctacaacctgttaacccaccgaagataaatcagcctacagctgcc aaacaaattgtgaactttgaagatagggacaaggaaagggagggaagtgatggcaaggagttgtctaactttagtttacg catggatatgtactcaaagaaagctttaaaggataaaggagcggccacacgttctcgtgaatggacagaccaggagacgt tactattattagaaggtctggagatgtataaggacgactggaacaaagtcagtgagcacgtcggaagccggacgcaagac gagtgtattctacatttcctcagattacccatcgaagatcctttcctggaggagggagattttggacacgctggtccctt ggccttccagcccctccctttctctcagtcaggtaaccccattatgtctacagtggctttcctagcgtcagtggtggatc caagggtcgctagttcagcagccaaggcagcgttagaggagttttccaagatgaaggatgaggtacccccagcgctgact gacgcccatattaaggtggtggaggaggcccagaaagaaggcaaacaagtggattctcagtatgggcttgagaaaagtgg tatagctggcaccacacctgagaaagaggagggtaaggaagaggaaaagaaagaagaaaagaaagaaaagtcagaagatg aaagtaaagatggggaaaaagaaagtgcagaagaaggaaaagaaaagaaagaggaatcaatggaaacagatgaagtaaaa gaagaaaaaaaggaggaagagaaaaaagaagaatcagatgaaaaagaaaagacagaagagcctaaagaagattctgaggc tcccaaagaagaaaagaaagaagaaaagatggaaggagtggaggaggaaaaagagaaagagaaagaaggagaagagaaga cagaagaaaagtcgttagaggtcgtcaaacataaaccggacggtaatgtagcgacagcagcagcagcatcactggcagcc gccgctgttaaagctaagcatttagcagcagtggaggagaggaagatcaagagtctggtagccttgttagtagagacaca gatgaagaagctggagatcaaacttagacattttgaagaactagagacgataatggacagggagagagatgcgctggagt atcaacgtcagcagcttctacaggagagacagcagttccacctggaacagataaaggctgccgaacatcgcgcacggcaa atagccatgcagcaaatgatggcagagcaaaaacagcaacaacagggtggaggggatccaggtgctggagcagcaggcag tgcatctgcacctaatccctccctcgctgccgctgtaggacagagctatcccctctctggctctcctatgcctccccagg gtccccaagctacacagggatcccctgccccaccccctgccccaccccaaggggcagtgcctacttctacaactgcttca gaaggtgtaacccctcaaagcacacccctacctgcaacatcaacaaaggggatagaatctcaagcatcccaaggtcctac agaaatgaaatcagaatccatggtaacggaagccccaccctgcagtaaccagactttggcagcaacagactcatag |
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| Transcript ID | pfu_aug2.0_93.1_10263.t2 |
| Definition | - |
>pfu_aug2.0_93.1_10263.t2 atggcgctgcacaagaaaaaggacggtggcccgaatacaaaatatttcgaggccgtagagactattgcccagtttgattc agttcgaacatggttgaataaaaaccataaaaagatttcgagaaatctcacccagtatattcaggaaaatggagaatcaa tcagcactgagctatcgggatgtccctttagctcactcagtaatgtagtatactatggatcgtatgactgggatctgcac aaccttgccagagctaggtttgagagaaaagggtcaccacaaggggtacaccaccgcgctctacagctaaagaaaggagg ggagggtgtagtatttctggtggcacagatgcgatgtttcttggacttcaaatctggcggagcactttgtcatattttag cagccgtctacaaattcaaaagtgaccaaggatggagacggtttgatttccagtccccgtcacggatggacagaaatgta gagatgtttttacagatagagaaatcactgatacagaacaagtgtcacacccctccctccatatatctaacctccgacat agataaaactctcattcctaagttaaaagatattgtaaagcgccatcaagggacaatctgtgatgatgaagaggaggcaa ctcatgttatacatcctctcccacctaaaggatctgatgaagaggattatgtgaagccagttatgaagagggataagttt actatcatacattggtgttactatccggacagctatgacacctgcgtcagtgacctacatgttgatgtagagggtgattc ccccaatcatcagggaccatttgaggtgacagcgagatggttacttgacttggaggaattcaacgaatggatgaacgaag aagattactccgtggatgaggagtttgattctaagaaaggcaagaaagtcaagacatcaaagatgacggtagatgagtta cttgcaattcatgatgaaaggaaagaaaaacgagataaaaaaggcaaaaaaaggaatcgatcaccgtcaccatcacccgt acctacgtctgaaaagaaaaaaaggaaaagcacacgtacgcaggcagctcctggatcgagtagtaagaaacgcccaatta aagacgaggacgaggaggatttgacgagggacatggatgatccgtcacctgacaccaacatacaggaagtacaacttgca aaacaatccagcagttcccgtagtaacaaggatacagagaatcagcctgtcaaaggtggaacgataatggacctggacga ggacacaaatgataagtttaacggtgaggataaaggcgatgtagaggacacagtcgaggaagataaaaaagacaaagaag aagaagataacgtaacagagcagacacatcacatcattatacccagctactcggcgtggtttgattataacgccatacac gctatagagagacgggcactgccggagttctttaacgggaaaaacaagtcaaaaaccccagagatctactcggcctacag aaacttcatcctggatacataccgtctaaatcccacagagtacctgaccagtacggcgtgtagacgtaatctggccgggg acgtttgtgcaataatgagagttcatgctttcctagaacagtggggcttagtgaattaccaggtagatgctgataacagg ccgacgcccatgggccccccacccacctcacacttccatattatggcagacacaccctctggtctacaacctgttaaccc accgaagataaatcagcctacagctgccaaacaaattgtgaactttgaagatagggacaaggaaagggagggaagtgatg gcaaggagttgtctaactttagtttacgcatggatatgtactcaaagaaagctttaaaggataaaggagcggccacacgt tctcgtgaatggacagaccaggagacgttactattattagaaggtctggagatgtataaggacgactggaacaaagtcag tgagcacgtcggaagccggacgcaagacgagtgtattctacatttcctcagattacccatcgaagatcctttcctggagg agggagattttggacacgctggtcccttggccttccagcccctccctttctctcagtcaggtaaccccattatgtctaca gtggctttcctagcgtcagtggtggatccaagggtcgctagttcagcagccaaggcagcgttagaggagttttccaagat gaaggatgaggtacccccagcgctgactgacgcccatattaaggtggtggaggaggcccagaaagaaggcaaacaagtgg attctcagtatgggcttgagaaaagtggtatagctggcaccacacctgagaaagaggagggtaaggaagaggaaaagaaa gaagaaaagaaagaaaagtcagaagatgaaagtaaagatggggaaaaagaaagtgcagaagaaggaaaagaaaagaaaga ggaatcaatggaaacagatgaagtaaaagaagaaaaaaaggaggaagagaaaaaagaagaatcagatgaaaaagaaaaga cagaagagcctaaagaagattctgaggctcccaaagaagaaaagaaagaagaaaagatggaaggagtggaggaggaaaaa gagaaagagaaagaaggagaagagaagacagaagaaaagtcgttagaggtcgtcaaacataaaccggacggtaatgtagc gacagcagcagcagcatcactggcagccgccgctgttaaagctaagcatttagcagcagtggaggagaggaagatcaaga gtctggtagccttgttagtagagacacagatgaagaagctggagatcaaacttagacattttgaagaactagagacgata atggacagggagagagatgcgctggagtatcaacgtcagcagcttctacaggagagacagcagttccacctggaacagat aaaggctgccgaacatcgcgcacggcaaatagccatgcagcaaatgatggcagagcaaaaacagcaacaacagggtggag gggatccaggtgctggagcagcaggcagtgcatctgcacctaatccctccctcgctgccgctgtaggacagagctatccc ctctctggctctcctatgcctccccagggtccccaagctacacagggatcccctgccccaccccctgccccaccccaagg ggcagtgcctacttctacaactgcttcagaaggtgtaacccctcaaagcacacccctacctgcaacatcaacaaagggga tagaatctcaagcatcccaaggtcctacagaaatgaaatcagaatccatggtaacggaagccccaccctgcagtaaccag actttggcagcaacagactcatag |
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Protein
| Protein ID | pfu_aug2.0_93.1_10263.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_93.1_10263.t1 MRCFLDFKSGGALCHILAAVYKFKSDQGWRRFDFQSPSRMDRNVEMFLQIEKSLIQNKCHTPPSIYLTSDIDKTLIPKLK DIVKRHQGTICDDEEEATHVIHPLPPKGSDEEDYVKPVMKRDKFTIIHWCYYPDSYDTCVSDLHVDVEGDSPNHQGPFEV TARWLLDLEEFNEWMNEEDYSVDEEFDSKKGKKVKTSKMTVDELLAIHDERKEKRDKKGKKRNRSPSPSPVPTSEKKKRK STRTQAAPGSSSKKRPIKDEDEEDLTRDMDDPSPDTNIQEVQLAKQSSSSRSNKDTENQPVKGGTIMDLDEDTNDKFNGE DKGDVEDTVEEDKKDKEEEDNVTEQTHHIIIPSYSAWFDYNAIHAIERRALPEFFNGKNKSKTPEIYSAYRNFILDTYRL NPTEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLVNYQVDADNRPTPMGPPPTSHFHIMADTPSGLQPVNPPKINQPTAA KQIVNFEDRDKEREGSDGKELSNFSLRMDMYSKKALKDKGAATRSREWTDQETLLLLEGLEMYKDDWNKVSEHVGSRTQD ECILHFLRLPIEDPFLEEGDFGHAGPLAFQPLPFSQSGNPIMSTVAFLASVVDPRVASSAAKAALEEFSKMKDEVPPALT DAHIKVVEEAQKEGKQVDSQYGLEKSGIAGTTPEKEEGKEEEKKEEKKEKSEDESKDGEKESAEEGKEKKEESMETDEVK EEKKEEEKKEESDEKEKTEEPKEDSEAPKEEKKEEKMEGVEEEKEKEKEGEEKTEEKSLEVVKHKPDGNVATAAAASLAA AAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDRERDALEYQRQQLLQERQQFHLEQIKAAEHRARQ IAMQQMMAEQKQQQQGGGDPGAGAAGSASAPNPSLAAAVGQSYPLSGSPMPPQGPQATQGSPAPPPAPPQGAVPTSTTAS EGVTPQSTPLPATSTKGIESQASQGPTEMKSESMVTEAPPCSNQTLAATDS |
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| Protein ID | pfu_aug2.0_93.1_10263.t2 |
| Definition | - |
>pfu_aug2.0_93.1_10263.t2 MALHKKKDGGPNTKYFEAVETIAQFDSVRTWLNKNHKKISRNLTQYIQENGESISTELSGCPFSSLSNVVYYGSYDWDLH NLARARFERKGSPQGVHHRALQLKKGGEGVVFLVAQMRCFLDFKSGGALCHILAAVYKFKSDQGWRRFDFQSPSRMDRNV EMFLQIEKSLIQNKCHTPPSIYLTSDIDKTLIPKLKDIVKRHQGTICDDEEEATHVIHPLPPKGSDEEDYVKPVMKRDKF TIIHWCYYPDSYDTCVSDLHVDVEGDSPNHQGPFEVTARWLLDLEEFNEWMNEEDYSVDEEFDSKKGKKVKTSKMTVDEL LAIHDERKEKRDKKGKKRNRSPSPSPVPTSEKKKRKSTRTQAAPGSSSKKRPIKDEDEEDLTRDMDDPSPDTNIQEVQLA KQSSSSRSNKDTENQPVKGGTIMDLDEDTNDKFNGEDKGDVEDTVEEDKKDKEEEDNVTEQTHHIIIPSYSAWFDYNAIH AIERRALPEFFNGKNKSKTPEIYSAYRNFILDTYRLNPTEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLVNYQVDADNR PTPMGPPPTSHFHIMADTPSGLQPVNPPKINQPTAAKQIVNFEDRDKEREGSDGKELSNFSLRMDMYSKKALKDKGAATR SREWTDQETLLLLEGLEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPFLEEGDFGHAGPLAFQPLPFSQSGNPIMST VAFLASVVDPRVASSAAKAALEEFSKMKDEVPPALTDAHIKVVEEAQKEGKQVDSQYGLEKSGIAGTTPEKEEGKEEEKK EEKKEKSEDESKDGEKESAEEGKEKKEESMETDEVKEEKKEEEKKEESDEKEKTEEPKEDSEAPKEEKKEEKMEGVEEEK EKEKEGEEKTEEKSLEVVKHKPDGNVATAAAASLAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETI MDRERDALEYQRQQLLQERQQFHLEQIKAAEHRARQIAMQQMMAEQKQQQQGGGDPGAGAAGSASAPNPSLAAAVGQSYP LSGSPMPPQGPQATQGSPAPPPAPPQGAVPTSTTASEGVTPQSTPLPATSTKGIESQASQGPTEMKSESMVTEAPPCSNQ TLAATDS |
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