Gene
| Gene Model ID | pfu_aug2.0_930.1_01250 |
|---|---|
| Locus | scaffold930.1 : 125816 ... 150034 : + |
| To GenomeBrowser | scaffold930.1:125816..150034 |
| Genes list of scaffold | scaffold930.1 |
| Synonym | pfu_aug1.0_294.1_36465 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| t-box transcription factor partial | GO:0000122 GO:0000978 GO:0001078 GO:0001102 GO:0001501 GO:0001568 GO:0001701 GO:0001947 GO:0003151 GO:0003167 GO:0005634 GO:0005667 GO:0008595 GO:0010159 GO:0019827 GO:0021761 GO:0030539 GO:0030540 GO:0030857 GO:0032275 GO:0035115 GO:0035116 GO:0042733 GO:0043066 GO:0045662 GO:0045787 GO:0045893 GO:0046884 GO:0048332 GO:0060021 GO:0060412 GO:0060444 GO:0060596 GO:0060923 GO:0060931 GO:0090398 GO:2000648 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_930.1_01250.t1 | 1 | 1 | T-box | 90 | 272 | 0.0 | 293.5 | 0.0 | 0.0 | 293.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_930.1_01250.t1 | gi|676455281|ref|XP_009053954.1| | hypothetical protein LOTGIDRAFT_116991 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_930.1_01250.t1 | gi|149063472|gb|EDM13795.1| | T-box 3, isoform CRA_c [Rattus norvegicus] | 0.0 |
| pfu_aug2.0_930.1_01250.t1 | gi|531999753|ref|XP_005344406.1| | PREDICTED: T-box transcription factor TBX3 isoform X2 [Microtus ochrogaster] | 0.0 |
| pfu_aug2.0_930.1_01250.t1 | gi|148687838|gb|EDL19785.1| | T-box 3, isoform CRA_a [Mus musculus] | 0.0 |
| pfu_aug2.0_930.1_01250.t1 | gi|395513913|ref|XP_003761166.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_930.1_01250.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_930.1_01250.t1 atgattttccagggaccaaatccggatttacccatggcttataatccatttcttcttcacagacccgcggattatggagc ccttctacagcagcattacctccaggggatgggcgttcccaaccccgccggacttccaggatctctgctacccaaactac aacaatcagcgtcccgagcgcccctcacccccggggatttgattcatcctttccacccgaggcctctccgagttttggaa ccagagtccgacgcccaagatgaccctaaagtggaaatagagtccaaagaactatgggaacagtttcataaatttggaac cgaaatggttatcacaaaatccggcaggcgcatgtttcctccatttaaagttcgggtttccggtttagacaaacgtgcca aatacatacttctaatggacatagtcgcagtcgacgactgtaggtacaaattccacaacagtcgatggatggtcgccggg aaggcggatccagaaatgccgaagcggatgtacatccaccccgactcccccagcacgggcgagcagtggatgcagaaagt cgtttccttccataaactcaaactgaccaacaacatttcggacaaacatggctatacgatcctgaactccatgcacaagt atcagcctcgatttcatctcgtccgagcaaacgacatcctcaaactaccgtattccgctttccggacttacgtgttcaaa gagacagaattcatagcagtaacggcttatcaaaatgaaaagattacacaattaaagattgacaacaatccgttcgcaaa aggcttcagggattccgggagcggaaaacgagagaaaaaaagactgttattgagttctagtcagcaatcatcgtctgaga cgcacgcagacgacgcctcacatgcagacgacactcacagtgacgacgacgatgacgcagagatatgcgtcgacgaaact gatgacgcaatggaaacaccgattccaatttctactcagcttcaatctgattccaaagatactgtgaaaacagaagcagc tgaagtccccgctaaagaatcaaccgatacatctattaaaccaaatgatgacgtaccggaagttactgatcacatgccta agtcatttccgccggtagtgaaagtgagtgctcatccgccttctaaacacacagtggaacagatgctggcgacgtcacca cctaaaaaagacactgaacctaaaatcctcatcccatccgcaagttattctgtggaacgcaatctcacatcttcaataga caatgaatcatcccaaggtgttccgcgtgtgaagtcgcccgtatcagactgtgataatgatcgccggaggtcaaggtcac cttctccgcgctcaatggggtcaaggtcaccggagaattccagatcgccgttgtatagtagaccattcagcaaggatgtg acaagtccccccaatgtgactgtagttcagccatcagtatcgcatcccattttcccgtatttatatccgtacactacaac ctccccaaatttcccttattctgtcggctccatgcttttgtctggatcttcatctctctcacagggcttacagatgccat ttctacctacttccggtcattcggaacttggacatctacctccctctcatgcgcatgcgttgtcaactctaagtcaattt cctcttccgagtcatcctttgatgcagccaaattattctagtctctcttcatctcttaacgcacggacaccgtcttcgcc gtctcaactaccgggaccaggcatcggaccgatatttccgacgcgggcaaatccaagatattcgccctacgccctgtcga tgtcaaaatcaccaagcgactcttcatcgagggatatgaacatttcttcggcatcgcctccgtcaaatggcggaattagc cgaccgtcgccgatcagaccacgaagtccattaggacaccatttatcccccggttcatcgggaacgaacccgactagcga actgaaaagcatggaattaatgttaaatggtttggacagaaagaaaggaccgcatcgagatccaaattctttgctaatgg agaaataa |
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Protein
| Protein ID | pfu_aug2.0_930.1_01250.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_930.1_01250.t1 MIFQGPNPDLPMAYNPFLLHRPADYGALLQQHYLQGMGVPNPAGLPGSLLPKLQQSASRAPLTPGDLIHPFHPRPLRVLE PESDAQDDPKVEIESKELWEQFHKFGTEMVITKSGRRMFPPFKVRVSGLDKRAKYILLMDIVAVDDCRYKFHNSRWMVAG KADPEMPKRMYIHPDSPSTGEQWMQKVVSFHKLKLTNNISDKHGYTILNSMHKYQPRFHLVRANDILKLPYSAFRTYVFK ETEFIAVTAYQNEKITQLKIDNNPFAKGFRDSGSGKREKKRLLLSSSQQSSSETHADDASHADDTHSDDDDDAEICVDET DDAMETPIPISTQLQSDSKDTVKTEAAEVPAKESTDTSIKPNDDVPEVTDHMPKSFPPVVKVSAHPPSKHTVEQMLATSP PKKDTEPKILIPSASYSVERNLTSSIDNESSQGVPRVKSPVSDCDNDRRRSRSPSPRSMGSRSPENSRSPLYSRPFSKDV TSPPNVTVVQPSVSHPIFPYLYPYTTTSPNFPYSVGSMLLSGSSSLSQGLQMPFLPTSGHSELGHLPPSHAHALSTLSQF PLPSHPLMQPNYSSLSSSLNARTPSSPSQLPGPGIGPIFPTRANPRYSPYALSMSKSPSDSSSRDMNISSASPPSNGGIS RPSPIRPRSPLGHHLSPGSSGTNPTSELKSMELMLNGLDRKKGPHRDPNSLLMEK |
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