Gene
| Gene Model ID | pfu_aug2.0_9315.1_19678 |
|---|---|
| Locus | scaffold9315.1 : 1 ... 7722 : + |
| To GenomeBrowser | scaffold9315.1:1..7722 |
| Genes list of scaffold | scaffold9315.1 |
| Synonym | pfu_aug1.0_6114.1_59940 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| trna-dihydrouridine synthase | GO:0002943 GO:0017150 GO:0046872 GO:0050660 GO:0055114 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_9315.1_19678.t1 | 1 | 1 | Dus | 53 | 314 | 0.0 | 203.0 | 0.0 | 0.0 | 202.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_9315.1_19678.t1 | gi|195995959|ref|XP_002107848.1| | hypothetical protein TRIADDRAFT_49631 [Trichoplax adhaerens] | 0.0 |
| pfu_aug2.0_9315.1_19678.t1 | gi|564255802|ref|XP_006266871.1| | PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like [Alligator mississippiensis] | 0.0 |
| pfu_aug2.0_9315.1_19678.t1 | gi|557264220|ref|XP_006017582.1| | PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform X1 [Alligator sinensis] | 0.0 |
| pfu_aug2.0_9315.1_19678.t1 | gi|676455694|ref|XP_009054089.1| | hypothetical protein LOTGIDRAFT_144742, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_9315.1_19678.t1 | gi|699636597|ref|XP_009909113.1| | PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like [Picoides pubescens] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_9315.1_19678.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_9315.1_19678.t1 aaggaggagctactgaatcaagtattcacagtacagaaggaggtgtggctataaaagagaatgaccaaagtaggatagga ggaggtgtcactgatgaggaagtcattaagctccgcccacaagaaaagaaaaaaattgagtttgctggtaaaagttatct agcaccccttactacggttggtaatttaccgtttcgtcgtgtctgtaaggagttcggagttgatattacatgtagtgaga tggccatggctacaaacatcctgaatggccagatgtctgagtgggcacttatgaaaagacacgtgtcagaggacttgttt ggtgtgcagatctgtggagggtggccggactccctgtcacgctgtgctcagctcatcaacgagaaagtagagatggattt tgtggatttgaattgtggatgtccgatagatcttgtctataagaggggagagggtagtgccctgccagggaagctgaata agtttgagcagattatacgagggatgaaatcagtactagacgtaccgctgactgtcaaaatgaggactggaatatttcag gacaaaaatatcgcacataccgttatacctaaactgagagactggggtgctgccatggtgactcttcatggtagatctag ggaacagcgttacactcgcctggctgactgggaatatatcaaccaatgtgccgaggcagcagatcctatgccgttatttg gcaatggtgacatactatcctatgaagatcttgacttccatctgaatcagacaaaggtcaaaggtgtcatggttgctaga ggagcattgatcaagccgtggatattcacggagatgaaggagcgtcgtcactgggatatttccgcctcggagagatacga catgcttaaaagatacacctcctacggtctggagcactgggggtctgatcaccagggtgtggagacaactagaagatttc tgatggagtggctgtcatttctgtataggtacataccagtaggtcttttggagcaggtacctcagaaaatcaacgagaga ccgccgtattatgtaggtcgtaatgacctagaaacattgatggctagtcctagctgcttagactggatcaaactcag |
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Protein
| Protein ID | pfu_aug2.0_9315.1_19678.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_9315.1_19678.t1 GGATESSIHSTEGGVAIKENDQSRIGGGVTDEEVIKLRPQEKKKIEFAGKSYLAPLTTVGNLPFRRVCKEFGVDITCSEM AMATNILNGQMSEWALMKRHVSEDLFGVQICGGWPDSLSRCAQLINEKVEMDFVDLNCGCPIDLVYKRGEGSALPGKLNK FEQIIRGMKSVLDVPLTVKMRTGIFQDKNIAHTVIPKLRDWGAAMVTLHGRSREQRYTRLADWEYINQCAEAADPMPLFG NGDILSYEDLDFHLNQTKVKGVMVARGALIKPWIFTEMKERRHWDISASERYDMLKRYTSYGLEHWGSDHQGVETTRRFL MEWLSFLYRYIPVGLLEQVPQKINERPPYYVGRNDLETLMASPSCLDWIKL |
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