Gene
| Gene Model ID | pfu_aug2.0_932.1_08022 |
|---|---|
| Locus | scaffold932.1 : 135677 ... 153945 : - |
| To GenomeBrowser | scaffold932.1:135677..153945 |
| Genes list of scaffold | scaffold932.1 |
| Synonym | pfu_aug1.0_2310.1_66270 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_932.1_08022.t1 | 3 | 1 | CBF | 4 | 43 | 7.00649e-44 | 149.1 | 0.047 | 350.0 | 0.5 |
| pfu_aug2.0_932.1_08022.t1 | 3 | 2 | CBF | 104 | 157 | 7.00649e-44 | 149.1 | 0.016 | 120.0 | 2.0 |
| pfu_aug2.0_932.1_08022.t1 | 3 | 3 | CBF | 264 | 414 | 7.00649e-44 | 149.1 | 0.0 | 1.30321e-43 | 148.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_932.1_08022.t1 | gi|676466889|ref|XP_009057711.1| | hypothetical protein LOTGIDRAFT_233423 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_932.1_08022.t1 | gi|291227597|ref|XP_002733773.1| | PREDICTED: nucleolar complex protein 4 homolog B-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_932.1_08022.t1 | gi|736183471|ref|XP_010769367.1| | PREDICTED: nucleolar complex protein 4 homolog [Notothenia coriiceps] | 0.0 |
| pfu_aug2.0_932.1_08022.t1 | gi|597764384|ref|XP_007246113.1| | PREDICTED: nucleolar complex protein 4 homolog isoform X1 [Astyanax mexicanus] | 0.0 |
| pfu_aug2.0_932.1_08022.t1 | gi|530619797|ref|XP_005299587.1| | PREDICTED: nucleolar complex protein 4 homolog [Chrysemys picta bellii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_932.1_08022.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_932.1_08022.t1 atggaaacactgaatgaggaacccaccatacagttggcttgtataaaggcattccacaaaatttttttgcactttatatc aacggaggaactcttactctctttacccgaaggcgtggcagatgaagatcttacaaaggaagaaaaatacaagcaatggt taaatgataaatacagcattgttattgacatcttaatccagtttacatctagtgacaacaaggctgtacgggaacattca ttatgcacattgatgaagtttgtgcagcaagaaggacagacaccaattacaaagcttcgagacagacaggtttactttcc agcaaagctatttgagaaaatattatcagctctagtcagtgatacaacagacaaacaagatctgattggtcgatttctgg agtatgcagattacgatgatatacgatactatgtcctgaaattccttctgtcgagcctgaaaagtaaacaacaagcaact ctgtcagatgtttacctcaacaatttattttcgttactggagcagatttccttccctcagatagagcaggacacttgtac tcatttcctttcaaaatgtccagaggaaggagcagctcccaaaatgaccagcaccaaggaacacaaaaagatgttttctc atgtttggttagatttcctcagacataagttgcccgcatcgctgtataagagagtactagtcatgttacacgagaaggtg atgccgcatttgaccagtcctctactcctcagtgatttccttactcaatcatatgaaataggtggagcaatcagcctttt ggccctgaatggactatttatattggtgcataagtacaacctcgattatccagatttctatgagaagttgtatgccttgt ttgagcccagtgtctttcatgttaagtatcgagcccgctttttctttctagcggatctctttctcacttcaagccatcta ccagcgtatttggtggcagcatttgcaaaaaggttggctcgtctttcactgacggcaccgcagtttggtttgaccgttat cgtcccattcatttataacctgattaaccgacatcctaactgtaaagtcctactgcatcggactgactcaatgacagaag ttgctgaagatccatatctcccagaggaacctgatcctgcaaaatgtcaagctctacagagctccttatgggaattacag accttacagaatcacataaatcctgacgtagctagaatgtgtcagagaatagatcatccactacagaaagatgagattcc tctacaagatctactcgagacttcatacactgagctatttgagaaggaaaccaagaagaaagtgaaacatgctcctgtga actttgaccttcctagaggattattgaatcataaaagtgaccgattcgcaatgtgctggacattaacttga |
|
Protein
| Protein ID | pfu_aug2.0_932.1_08022.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_932.1_08022.t1 METLNEEPTIQLACIKAFHKIFLHFISTEELLLSLPEGVADEDLTKEEKYKQWLNDKYSIVIDILIQFTSSDNKAVREHS LCTLMKFVQQEGQTPITKLRDRQVYFPAKLFEKILSALVSDTTDKQDLIGRFLEYADYDDIRYYVLKFLLSSLKSKQQAT LSDVYLNNLFSLLEQISFPQIEQDTCTHFLSKCPEEGAAPKMTSTKEHKKMFSHVWLDFLRHKLPASLYKRVLVMLHEKV MPHLTSPLLLSDFLTQSYEIGGAISLLALNGLFILVHKYNLDYPDFYEKLYALFEPSVFHVKYRARFFFLADLFLTSSHL PAYLVAAFAKRLARLSLTAPQFGLTVIVPFIYNLINRHPNCKVLLHRTDSMTEVAEDPYLPEEPDPAKCQALQSSLWELQ TLQNHINPDVARMCQRIDHPLQKDEIPLQDLLETSYTELFEKETKKKVKHAPVNFDLPRGLLNHKSDRFAMCWTLT |
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