Gene
| Gene Model ID | pfu_aug2.0_933.1_11318 |
|---|---|
| Locus | scaffold933.1 : 161560 ... 177265 : - |
| To GenomeBrowser | scaffold933.1:161560..177265 |
| Genes list of scaffold | scaffold933.1 |
| Synonym | pfu_aug1.0_1416.1_29717 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| 60s ribosome subunit biogenesis protein nip7 homolog | GO:0005730 GO:0042255 GO:0044822 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_933.1_11318.t1 | 1 | 1 | UPF0113 | 36 | 148 | 2.0e-06 | 27.5 | 1.7e-10 | 2.5e-06 | 27.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_933.1_11318.t1 | gi|597760172|ref|XP_007244097.1| | PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Astyanax mexicanus] | 0.0 |
| pfu_aug2.0_933.1_11318.t1 | gi|148235457|ref|NP_001086529.1| | 60S ribosome subunit biogenesis protein NIP7 homolog [Xenopus laevis] | 0.0 |
| pfu_aug2.0_933.1_11318.t1 | gi|156717940|ref|NP_001096512.1| | 60S ribosome subunit biogenesis protein NIP7 homolog [Xenopus (Silurana) tropicalis] | 0.0 |
| pfu_aug2.0_933.1_11318.t1 | gi|390360790|ref|XP_785166.3| | 0.0 | |
| pfu_aug2.0_933.1_11318.t1 | gi|327287504|ref|XP_003228469.1| | PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Anolis carolinensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_933.1_11318.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_933.1_11318.t1 atgagaccgttaaccgatgaagagacacgcactttcttcgagaagttatcaaaatatattggtgagaacataaaattgct gttagacagaccagatggggtgtattgctttaggctgcacaggaaccgtgttttctacatcagggaggatctgatgaaga aggcaggaaacatagctcgtaagaacctactgagtatgggaacatgttttggtaaattcacaaagacagataaattcagg cttcagataacggcactagacttccttgctccctatgctaagtacaagatctggttaaagcccagtgctgagcagcagtt tgtatacggacaccatgtaatgaagtcagggcttggacgaattacagaaaatacctcccagtatcaaggtgttatagtct atagtatgagtgatctccccctgggttttggagtagctgccaaatctacccaggaatgtcgtcatgcagaccccatggcc ctagtggcgtttcaccaagctgatatcggtgaatatattagaagtgaagatacactgttatga |
|
Protein
| Protein ID | pfu_aug2.0_933.1_11318.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_933.1_11318.t1 MRPLTDEETRTFFEKLSKYIGENIKLLLDRPDGVYCFRLHRNRVFYIREDLMKKAGNIARKNLLSMGTCFGKFTKTDKFR LQITALDFLAPYAKYKIWLKPSAEQQFVYGHHVMKSGLGRITENTSQYQGVIVYSMSDLPLGFGVAAKSTQECRHADPMA LVAFHQADIGEYIRSEDTLL |
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