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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_935.1_17953
Locus scaffold935.1 : 160156 ... 167781 : +
To GenomeBrowser scaffold935.1:160156..167781
Genes list of scaffold scaffold935.1
Synonym pfu_aug1.0_3068.1_23153

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_935.1_17953.t1 2 1 VWA 34 204 0.0 161.3 6.2e-38 2.3e-34 118.6
pfu_aug2.0_935.1_17953.t1 2 1 VWA_2 34 201 9.1e-15 55.1 8.2e-15 3.1e-11 43.7
pfu_aug2.0_935.1_17953.t1 2 2 VWA 236 395 0.0 161.3 2.8e-15 1.0e-11 44.8
pfu_aug2.0_935.1_17953.t1 2 2 VWA_2 329 382 9.1e-15 55.1 0.00025 0.93 9.5

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_935.1_17953.t1 gi|524880674|ref|XP_005096998.1| PREDICTED: collagen alpha-3(VI) chain-like, partial [Aplysia californica] 7.0e-40

Transcript
Transcript IDpfu_aug2.0_935.1_17953.t1
Definition-
>pfu_aug2.0_935.1_17953.t1
atgatgaagtgcattttacctctatttgctatgatatcagtcctttatgcagcacctgcattagaaagaaatataagatg
gtgcaaaggtaagccagccgatgtgtttttcctgttggacagttcctccagtatatggatcgttgactaccgaaaacaac
tgaacttcgctgctaacgttacagactttttccaggtttcggaggacaagactcgtattgcagcggccgctttttcgaac
agatattcacaaaaatttgaatttggtgattacaacggcacggacaacctaagggagaaaattcatgaaatgccatattt
gactggtggcacaaaaacagacattgctttgaagaaaatgagggaatcttttcaaacaaatgctagaaaaggagtagccc
acattgcattcgtagtcactgatggaaattcagagtcatttaaggagactcggagggaggccgaaaagctgaaaaaggac
ggagtatacgtgtttgccattggaattggccgtagaattagtaataaggaattgagagccatagggagcgaaccagagga
ggagtttgtgtaccaagtggaggattttgataggctgaatgacatcagagacactgtcagagatacactagattactcta
cttgtcaagcacctactaccccaccccctatggacgagccgagatgtagcgccaaatctgatgttgacgttgttttcgca
ctggatgcaccttccatgggcattgagcaaactcgcagcgtgtacaacttcattggagaagtgacagaggaaattcacga
cgatttaggtagagtgcaggttggaatgatgtcaaaaatttgtaatgaccatgatatacagctgaaacaatacaaagatg
aattttcactagctcagacaatatcaaatgccaagttcaaagggttggaccatcaacttcataaacttcgtcacgaagga
tacagcttggaaaatggcggaagaccgaatgctaagaaggttgctgtgctttttgttgatgacagtatagaaaaatacga
ttccctgcttttggaggctgaagatgcaaagattagaaatggtattgatgtgtacgttgtggccattggagacaatgtaa
actatgcagcttgtggtttgatggccagcaaaccaagcaacgttatcaaagtctcttctcatcgagatcttggcttacta
aaagatgacttcctttttactttctgcaatggcacaggtgtaacaataaattctctacatccgggtgtaattccgacgga
acttggccgccatttcggaagatggctgcgcatactacagacattattatttccaattttgagaatgaccttgaaaacca
gagtccaaggagctcagacaaccatttattgtgccgtgtccgaagaactaaacgatgtttccgggaagtatttcaggtat
gtaaattga

Protein
Protein IDpfu_aug2.0_935.1_17953.t1
Definition-
>pfu_aug2.0_935.1_17953.t1
MMKCILPLFAMISVLYAAPALERNIRWCKGKPADVFFLLDSSSSIWIVDYRKQLNFAANVTDFFQVSEDKTRIAAAAFSN
RYSQKFEFGDYNGTDNLREKIHEMPYLTGGTKTDIALKKMRESFQTNARKGVAHIAFVVTDGNSESFKETRREAEKLKKD
GVYVFAIGIGRRISNKELRAIGSEPEEEFVYQVEDFDRLNDIRDTVRDTLDYSTCQAPTTPPPMDEPRCSAKSDVDVVFA
LDAPSMGIEQTRSVYNFIGEVTEEIHDDLGRVQVGMMSKICNDHDIQLKQYKDEFSLAQTISNAKFKGLDHQLHKLRHEG
YSLENGGRPNAKKVAVLFVDDSIEKYDSLLLEAEDAKIRNGIDVYVVAIGDNVNYAACGLMASKPSNVIKVSSHRDLGLL
KDDFLFTFCNGTGVTINSLHPGVIPTELGRHFGRWLRILQTLLFPILRMTLKTRVQGAQTTIYCAVSEELNDVSGKYFRY
VN

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