Gene
| Gene Model ID | pfu_aug2.0_94.1_13573 |
|---|---|
| Locus | scaffold94.1 : 20816 ... 55402 : + |
| To GenomeBrowser | scaffold94.1:20816..55402 |
| Genes list of scaffold | scaffold94.1 |
| Synonym | pfu_aug1.0_2323.1_15782 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| sodium- and chloride-dependent glycine transporter 2-like | GO:0006810 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_94.1_13573.t1 | 1 | 1 | SNF | 28 | 473 | 0.0 | 517.1 | 0.0 | 0.0 | 511.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_94.1_13573.t1 | gi|688563304|ref|XP_009301240.1| | PREDICTED: sodium- and chloride-dependent glycine transporter 2 isoform X1 [Danio rerio] | 0.0 |
| pfu_aug2.0_94.1_13573.t1 | gi|57222253|ref|NP_001009557.1| | sodium- and chloride-dependent glycine transporter 2 [Danio rerio] | 0.0 |
| pfu_aug2.0_94.1_13573.t1 | gi|675848188|ref|XP_009009654.1| | hypothetical protein HELRODRAFT_188048 [Helobdella robusta] | 0.0 |
| pfu_aug2.0_94.1_13573.t1 | gi|548434935|ref|XP_005744464.1| | PREDICTED: sodium- and chloride-dependent glycine transporter 2-like [Pundamilia nyererei] | 0.0 |
| pfu_aug2.0_94.1_13573.t1 | gi|573909968|ref|XP_006642702.1| | PREDICTED: sodium- and chloride-dependent glycine transporter 2-like [Lepisosteus oculatus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_94.1_13573.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_94.1_13573.t1 atggcgtctcacgatgtgagtaaagtggaagcggacggagggagacacaagtctaaatttgatgaagacgagaacaagga gaggggtaattggacagggaaattagactttttattgagttgccttggatacgccgttggtttgggaaatgtttggcgtt ttccctatctttgctacagaaatggaggaggcgctttctttattccctacgtcattatgttgggtgtggtgggcgttccc atctttctcatggaacttgcccttggacagttcaccagcgctggaccatttacctgctggtcttttgccccgatattcac tggggttggatttggcatgtttgtggtatctgcactggttgccatctattacaacatgatcataggatgggctttctttt acctgtttgcctccttcacagatgaactaccatggagtacatgtggagaatggagcacaaacatgtgctatgacaacatt cttgttcttaacacgtcatatgagacctgcacgtttaacagaaagggtgagaagtggtttgctgactttgataagggtgt gtgttttaaggataacatgagtcagaacactgctggagttcgggcatttatagatgtggatagagctgataaggctggat tcaagagagttctaccgacacaggaatactttgattattactctgtgggatcaggggacagtggaggcctggatgacctg ggtcccataagatggcagctacttctatgttatctccttgccttcatctttgtatgtctctcactcagtaagagtatcaa atcttcaggaaaggttgtgtactttacagctacattcccatatctggtattggttatattatttatacgaggcctcatgt tggatggtatggaaaagggaattgagttttacataacacctaaattggacagactcaatgatgctggggtgtggaaggat gctgcagttcagattttcttctctctctcggcatcatggggtggtcttatagcactggctagttataatcgcttccataa tgactgtgtcagggacgctttaattgtagcgtttggtaactgcctgaccagtgtgtttgcaggatttgtaatcttttcct accttggttatttatctaacttactcaatgttcccgtggatgaagtggctaaaagtggtccgtccttgaccttcgtggta ttcccctacgcagtgaccttgatgcctttacctccactatggtcaatcatctttttcatcatgttagtgacattgggtgt cgactctgagtttgtgctggtagagacagtgattacttctttgatggacaaattccccaagttgcgtgattataaattct tcacggtgatggtaacgtgcctgctgttcttcttgttgggactgactatgacaacaaatgataagtgtagggaagtagtt tgcgtgcctggaaagatccttgttgataaggagtgtaagcctattctacaaaagacgtctggatatggggcgtatatgga tatgagcgttaccgttctcgaatctaaagaaggtgactatgatctgaaagaagtgtttagagactttgcggaagctgtca tgttgcgttacaacattgaacccattggagataaaacgtctactatgaacatcaaggaggttgtcgtactggcatatcaa ccttgcacagcacaactgacaagtgacaacacatcagagatttacatacaagtgacgtatgaatcatacgcttcaatttc ccgggaggatgtcgataggaaactacaggagtttgttaatccatccttcgaaacaagagtttatggtttcctattcgatg tcaaggaaagcgacaaaaacctatggagtatattgcaaagtgagcaatctgaaggtatctgtgaatccccggatcctaca ttttatggtaacaaaattagaaggatcaaagacactaacagcataaccatcgaaaatgcgtcagaagcatcaaacgcctt ttctaccgtggatatgaatttaaaatgtcaccagccggacactcggcatggtacaggaccaatcaatctacgatattgta ccagcgcattcgtaagtcgtaattacgacatactaagtcgtaattacgacttaaacaattcacttaggttggcactagtc ggcttccgtagaaccacagaactgaaagaggaaactcaaaatatgatgaaaagaaaagacaaacatccgctaaaactttc tcagaaaaaaggattggctgagatgatggttgaggcatga |
|
Protein
| Protein ID | pfu_aug2.0_94.1_13573.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_94.1_13573.t1 MASHDVSKVEADGGRHKSKFDEDENKERGNWTGKLDFLLSCLGYAVGLGNVWRFPYLCYRNGGGAFFIPYVIMLGVVGVP IFLMELALGQFTSAGPFTCWSFAPIFTGVGFGMFVVSALVAIYYNMIIGWAFFYLFASFTDELPWSTCGEWSTNMCYDNI LVLNTSYETCTFNRKGEKWFADFDKGVCFKDNMSQNTAGVRAFIDVDRADKAGFKRVLPTQEYFDYYSVGSGDSGGLDDL GPIRWQLLLCYLLAFIFVCLSLSKSIKSSGKVVYFTATFPYLVLVILFIRGLMLDGMEKGIEFYITPKLDRLNDAGVWKD AAVQIFFSLSASWGGLIALASYNRFHNDCVRDALIVAFGNCLTSVFAGFVIFSYLGYLSNLLNVPVDEVAKSGPSLTFVV FPYAVTLMPLPPLWSIIFFIMLVTLGVDSEFVLVETVITSLMDKFPKLRDYKFFTVMVTCLLFFLLGLTMTTNDKCREVV CVPGKILVDKECKPILQKTSGYGAYMDMSVTVLESKEGDYDLKEVFRDFAEAVMLRYNIEPIGDKTSTMNIKEVVVLAYQ PCTAQLTSDNTSEIYIQVTYESYASISREDVDRKLQEFVNPSFETRVYGFLFDVKESDKNLWSILQSEQSEGICESPDPT FYGNKIRRIKDTNSITIENASEASNAFSTVDMNLKCHQPDTRHGTGPINLRYCTSAFVSRNYDILSRNYDLNNSLRLALV GFRRTTELKEETQNMMKRKDKHPLKLSQKKGLAEMMVEA |
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