Gene
| Gene Model ID | pfu_aug2.0_9474.1_16381 |
|---|---|
| Locus | scaffold9474.1 : 1 ... 7413 : - |
| To GenomeBrowser | scaffold9474.1:1..7413 |
| Genes list of scaffold | scaffold9474.1 |
| Synonym | pfu_aug1.0_3094.1_30338 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| leucine-rich repeat-containing isoform x1 | GO:0005509 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_9474.1_16381.t1 | 10 | 1 | LRR_6 | 61 | 80 | 1.9e-23 | 79.8 | 0.0033 | 5.4 | 7.4 |
| pfu_aug2.0_9474.1_16381.t1 | 8 | 1 | LRR_7 | 64 | 72 | 7.1e-06 | 25.4 | 0.89 | 1500.0 | 0.3 |
| pfu_aug2.0_9474.1_16381.t1 | 9 | 1 | LRR_1 | 65 | 74 | 6.2e-13 | 46.8 | 0.19 | 320.0 | 2.0 |
| pfu_aug2.0_9474.1_16381.t1 | 5 | 1 | LRR_4 | 65 | 70 | 3.5e-08 | 32.8 | 1.2 | 2000.0 | -1.5 |
| pfu_aug2.0_9474.1_16381.t1 | 10 | 2 | LRR_6 | 87 | 109 | 1.9e-23 | 79.8 | 4.4e-05 | 0.072 | 13.1 |
| pfu_aug2.0_9474.1_16381.t1 | 9 | 2 | LRR_1 | 91 | 101 | 6.2e-13 | 46.8 | 0.028 | 45.0 | 4.6 |
| pfu_aug2.0_9474.1_16381.t1 | 5 | 2 | LRR_4 | 91 | 130 | 3.5e-08 | 32.8 | 0.00018 | 0.3 | 10.7 |
| pfu_aug2.0_9474.1_16381.t1 | 8 | 2 | LRR_7 | 91 | 101 | 7.1e-06 | 25.4 | 0.041 | 68.0 | 4.3 |
| pfu_aug2.0_9474.1_16381.t1 | 10 | 3 | LRR_6 | 115 | 137 | 1.9e-23 | 79.8 | 0.00018 | 0.3 | 11.2 |
| pfu_aug2.0_9474.1_16381.t1 | 5 | 3 | LRR_4 | 116 | 162 | 3.5e-08 | 32.8 | 4.3e-06 | 0.0071 | 15.9 |
| pfu_aug2.0_9474.1_16381.t1 | 8 | 3 | LRR_7 | 117 | 129 | 7.1e-06 | 25.4 | 1.7 | 2800.0 | -0.5 |
| pfu_aug2.0_9474.1_16381.t1 | 9 | 3 | LRR_1 | 118 | 129 | 6.2e-13 | 46.8 | 0.065 | 110.0 | 3.5 |
| pfu_aug2.0_9474.1_16381.t1 | 10 | 4 | LRR_6 | 144 | 158 | 1.9e-23 | 79.8 | 0.0016 | 2.6 | 8.3 |
| pfu_aug2.0_9474.1_16381.t1 | 5 | 4 | LRR_4 | 144 | 184 | 3.5e-08 | 32.8 | 3.1e-07 | 0.00051 | 19.5 |
| pfu_aug2.0_9474.1_16381.t1 | 8 | 4 | LRR_7 | 144 | 154 | 7.1e-06 | 25.4 | 0.029 | 48.0 | 4.8 |
| pfu_aug2.0_9474.1_16381.t1 | 9 | 4 | LRR_1 | 145 | 158 | 6.2e-13 | 46.8 | 0.0011 | 1.8 | 8.9 |
| pfu_aug2.0_9474.1_16381.t1 | 10 | 5 | LRR_6 | 171 | 193 | 1.9e-23 | 79.8 | 0.00015 | 0.25 | 11.5 |
| pfu_aug2.0_9474.1_16381.t1 | 8 | 5 | LRR_7 | 172 | 184 | 7.1e-06 | 25.4 | 0.00058 | 0.96 | 9.9 |
| pfu_aug2.0_9474.1_16381.t1 | 9 | 5 | LRR_1 | 173 | 185 | 6.2e-13 | 46.8 | 0.0023 | 3.8 | 7.9 |
| pfu_aug2.0_9474.1_16381.t1 | 10 | 6 | LRR_6 | 201 | 221 | 1.9e-23 | 79.8 | 0.00046 | 0.76 | 10.0 |
| pfu_aug2.0_9474.1_16381.t1 | 9 | 6 | LRR_1 | 202 | 213 | 6.2e-13 | 46.8 | 0.22 | 360.0 | 1.8 |
| pfu_aug2.0_9474.1_16381.t1 | 8 | 6 | LRR_7 | 202 | 212 | 7.1e-06 | 25.4 | 2.7 | 4500.0 | -1.2 |
| pfu_aug2.0_9474.1_16381.t1 | 10 | 7 | LRR_6 | 227 | 249 | 1.9e-23 | 79.8 | 5.0e-06 | 0.0082 | 16.1 |
| pfu_aug2.0_9474.1_16381.t1 | 9 | 7 | LRR_1 | 230 | 248 | 6.2e-13 | 46.8 | 0.0005 | 0.83 | 9.9 |
| pfu_aug2.0_9474.1_16381.t1 | 5 | 5 | LRR_4 | 230 | 267 | 3.5e-08 | 32.8 | 0.00029 | 0.47 | 10.1 |
| pfu_aug2.0_9474.1_16381.t1 | 8 | 7 | LRR_7 | 230 | 242 | 7.1e-06 | 25.4 | 0.0023 | 3.9 | 8.1 |
| pfu_aug2.0_9474.1_16381.t1 | 10 | 8 | LRR_6 | 256 | 277 | 1.9e-23 | 79.8 | 0.0032 | 5.3 | 7.4 |
| pfu_aug2.0_9474.1_16381.t1 | 9 | 8 | LRR_1 | 258 | 270 | 6.2e-13 | 46.8 | 0.12 | 200.0 | 2.7 |
| pfu_aug2.0_9474.1_16381.t1 | 8 | 8 | LRR_7 | 258 | 268 | 7.1e-06 | 25.4 | 0.55 | 910.0 | 0.9 |
| pfu_aug2.0_9474.1_16381.t1 | 10 | 9 | LRR_6 | 285 | 295 | 1.9e-23 | 79.8 | 0.88 | 1500.0 | -0.1 |
| pfu_aug2.0_9474.1_16381.t1 | 9 | 9 | LRR_1 | 288 | 295 | 6.2e-13 | 46.8 | 2.7 | 4500.0 | -1.5 |
| pfu_aug2.0_9474.1_16381.t1 | 10 | 10 | LRR_6 | 354 | 363 | 1.9e-23 | 79.8 | 6.0 | 9900.0 | -2.7 |
Transcript
| Transcript ID | pfu_aug2.0_9474.1_16381.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_9474.1_16381.t1 aggcgacgtccacgtacgaccactcggggaggactacgtacatagagggatgtaaaaaagtgggcgtggttccagcctcc tacttcctccgtcacatgcacgaccccaaactgagtatgaagcaccacgggcttggatcacatggcatgagggctatagc aatgtctttagtatccaacacaaagattcttgaccttgacctcagtgataattggctaggtcacgatggaggattagctg tgtgtgaaatgctcaaagaaaattgttttatcacaaatcttaatttatcagacaataggctaggagcccgttgtgcagaa acattgtctaaaatattgcaacaaaatactacgctaactcatgtacgcttgtcaggtaatgattttgatgacaaagctgc agtgcatattgcagatgcattactaaatacaacaaaactagagtacttaaatttaagccataatttattcggtgagatgg caggtctcatccttggtccagcaatctcggagaacagctcgcttaaagaactcgatctcagctggaactcattacgcagg aaaggaggcgtggcagtagctcagggaatcaaacaaaatatatttttacggaaagtgaatttatcgtggaatggttttgg cttggatggtgctatagcattaggcgatgcattaaaggttaactgtgtattagaggagctcaatgtatcaaataacagaa taacaacagaaggttccgttttactcggtaaaggtttgtcagctaacgagactctacaggtgctaaagttgggtagaaat cctatgcagacagctggttgctatgcaatttgtgctgcaattctcagaaatccaaactgtacattacgagaaatagattt ctcagatatattagtgaacaaagatttcgaggacatattcaaacaagtacaagaacagcttcctgacattaagatgagac acggagggatggagccgccaatgaagccccgcgctcggatccaccccatgatcaaactgacaaactatatagagaaaaac aacttacgattggtggagtttttcaacaagtttgacaaggacggcagtatgagtgttacgtatgaggaatttgaacaggg tatagag |
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Protein
| Protein ID | pfu_aug2.0_9474.1_16381.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_9474.1_16381.t1 ATSTYDHSGRTTYIEGCKKVGVVPASYFLRHMHDPKLSMKHHGLGSHGMRAIAMSLVSNTKILDLDLSDNWLGHDGGLAV CEMLKENCFITNLNLSDNRLGARCAETLSKILQQNTTLTHVRLSGNDFDDKAAVHIADALLNTTKLEYLNLSHNLFGEMA GLILGPAISENSSLKELDLSWNSLRRKGGVAVAQGIKQNIFLRKVNLSWNGFGLDGAIALGDALKVNCVLEELNVSNNRI TTEGSVLLGKGLSANETLQVLKLGRNPMQTAGCYAICAAILRNPNCTLREIDFSDILVNKDFEDIFKQVQEQLPDIKMRH GGMEPPMKPRARIHPMIKLTNYIEKNNLRLVEFFNKFDKDGSMSVTYEEFEQGIE |
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