Gene
| Gene Model ID | pfu_aug2.0_95.1_16892 |
|---|---|
| Locus | scaffold95.1 : 868 ... 13667 : + |
| To GenomeBrowser | scaffold95.1:868..13667 |
| Genes list of scaffold | scaffold95.1 |
| Synonym | pfu_aug1.0_27677.1_19193 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| lamin-b receptor isoform x1 | GO:0016020 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_95.1_16892.t1 | 2 | 1 | ERG4_ERG24 | 116 | 431 | 0.0 | 389.5 | 0.0 | 0.0 | 330.6 |
| pfu_aug2.0_95.1_16892.t1 | 2 | 2 | ERG4_ERG24 | 435 | 484 | 0.0 | 389.5 | 1.5e-21 | 7.6e-18 | 64.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_95.1_16892.t1 | gi|676458736|ref|XP_009055073.1| | hypothetical protein LOTGIDRAFT_118629 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_95.1_16892.t1 | gi|524912235|ref|XP_005110968.1| | PREDICTED: lamin-B receptor-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_95.1_16892.t1 | gi|260781464|ref|XP_002585830.1| | hypothetical protein BRAFLDRAFT_62912 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_95.1_16892.t1 | gi|733876988|ref|XP_010704965.1| | PREDICTED: LOW QUALITY PROTEIN: lamin-B receptor [Meleagris gallopavo] | 0.0 |
| pfu_aug2.0_95.1_16892.t1 | gi|556998793|ref|XP_006002534.1| | PREDICTED: lamin-B receptor-like [Latimeria chalumnae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_95.1_16892.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_95.1_16892.t1 atggcatctccaaaaggtaagagatcttcgtcacgatccaggtccaccaagcttaggaagagtcgatcaaggagccgaag aagaagtcgtagtagaagccgaggacgttccgccacacgtcagaccaagcctgctacacccacaaggtcccagcccaaac ctgagatggccaccaaggctgagaaaagaccaagtacacccacaagatcatcaaagaaggtcaaggaagtactggatcat acaccaaccaggaaatcagcacgattagaaaacctgagtaaaccaccagaggagaggaaagttatggattttccatctga agcagagaaaaaagctgttagtaagacaaaggatagagaatttggtggagtgattggaacgttattcctgatgattacac tgcctatcaccacactcgtcctgaacaaaatgtgctcagagaacaagtgcaagcctcacgttccaaagttctccaaaaac tggagggactatttggacatggaagcctccctgatctacttaggctggttcacattccagtccgttctctacatgttgcc gataggaaaagtggtggaaggacagacactgaaaactggaggaaaactcaaatacagatgtaacggttttatatcgttcc tgatcagcttggcagcgtttggagcagccgtccattttaagctccccgtcggtatcgtacataagaaattcctacagctg attgtctccggtaccatcttcagttttgtcatgagtcttttcctctacatcaaggcacgacgagggccaaaatacaagct tgctcctggtggaaactcagggaacatcatctatgacttctttatgggccacgagcttaatcctagaataggcagctttg atctcaagttcttctgtgagctccgtccaggtctgattggctgggtcattattaacttggtattcctgtacgagacctac gagagaacgggagcttttcctccagcattgacaatggtggtggccttccaagctctgtatgttgccgacgcactgtggtt tgaggatgccattttgaccaccatggacattatacacgacggttttggttttatgttggttttcggtgacttggtttggg tgccgttcttgtactgcttacagacacgatacttgtcagaacaggaatttaatctgccgtggtactgtaatgtgggaatc gcattattgaacttggtagggtacttcatcttccgtggcagcaactcacagaaaaacgaattcaggaaaaacccttacaa cccagcacttgcacgatctggtactcctctaccatacttctaccccgtctacttcacgatccttctcattcaccgtcaga tccgagacgaagaacactgtgccaagagatacaaagctagctgggaccgttactgtgaacgagttcgctatagaatttgt ccgttagtctattaa |
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Protein
| Protein ID | pfu_aug2.0_95.1_16892.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_95.1_16892.t1 MASPKGKRSSSRSRSTKLRKSRSRSRRRSRSRSRGRSATRQTKPATPTRSQPKPEMATKAEKRPSTPTRSSKKVKEVLDH TPTRKSARLENLSKPPEERKVMDFPSEAEKKAVSKTKDREFGGVIGTLFLMITLPITTLVLNKMCSENKCKPHVPKFSKN WRDYLDMEASLIYLGWFTFQSVLYMLPIGKVVEGQTLKTGGKLKYRCNGFISFLISLAAFGAAVHFKLPVGIVHKKFLQL IVSGTIFSFVMSLFLYIKARRGPKYKLAPGGNSGNIIYDFFMGHELNPRIGSFDLKFFCELRPGLIGWVIINLVFLYETY ERTGAFPPALTMVVAFQALYVADALWFEDAILTTMDIIHDGFGFMLVFGDLVWVPFLYCLQTRYLSEQEFNLPWYCNVGI ALLNLVGYFIFRGSNSQKNEFRKNPYNPALARSGTPLPYFYPVYFTILLIHRQIRDEEHCAKRYKASWDRYCERVRYRIC PLVY |
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