Gene
| Gene Model ID | pfu_aug2.0_95.1_16899 |
|---|---|
| Locus | scaffold95.1 : 170452 ... 189966 : - |
| To GenomeBrowser | scaffold95.1:170452..189966 |
| Genes list of scaffold | scaffold95.1 |
| Synonym | pfu_aug1.0_10260.1_24702 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_95.1_16899.t1 | 2 | 1 | Ribosomal_L4 | 83 | 110 | 8.1e-27 | 93.8 | 1.7e-05 | 0.25 | 10.6 |
| pfu_aug2.0_95.1_16899.t1 | 2 | 2 | Ribosomal_L4 | 132 | 256 | 8.1e-27 | 93.8 | 3.9e-27 | 5.9e-23 | 81.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_95.1_16899.t1 | gi|524882518|ref|XP_005097902.1| | PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_95.1_16899.t1 | gi|676431530|ref|XP_009046282.1| | hypothetical protein LOTGIDRAFT_110717, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_95.1_16899.t1 | gi|675875886|ref|XP_009023503.1| | hypothetical protein HELRODRAFT_101733 [Helobdella robusta] | 0.0 |
| pfu_aug2.0_95.1_16899.t1 | gi|752892156|ref|XP_011264150.1| | PREDICTED: 39S ribosomal protein L4, mitochondrial [Camponotus floridanus] | 0.0 |
| pfu_aug2.0_95.1_16899.t1 | gi|390363081|ref|XP_792959.3| | PREDICTED: 39S ribosomal protein L4, mitochondrial isoform X2 [Strongylocentrotus purpuratus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_95.1_16899.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_95.1_16899.t1 atgacagaatttagacaatgtcgtcggtttatctcgctgaaaactagaaatgtgagcacaagctgtgataatcaacaaac cagtaaagctacaccaagtaacataattgattcacaaatattgggaagcaggagagccttaccagtggtaacttcccgag aaatccagtttccaaataaataccgagagcccaaacaagcatggctggagagtttatcccaacacgaggatgagaagctg ggtctaatagacctacatccagatatatttggagcttatccaagaatagatgtcttgcatcgcaatgtgaagtggcaatc cctttatagaaagattgcagtaggacaggctttgtcaacagtagaccacttgcaggaatggataaagggtaaaaaagtgg ggggcaaagcacttggtccaagaggtcctaagtcctatttttacatgctaccaacggaggagcgtgtcttgggcctgtgt acagctctatctgtaaagtatgctcaaggctacctacaaatcgtggaatctctagacataccaacagatgatcctcagta tctggaggatttgtttgatgtacgattctggggattttctgcgttatttgttgatgatactgatcagatgcctgagaaca ttgccatagcaaccagccatatcccacaatacaatttgatgcccgtttatggattaaatgtgtacagtatgctgaaacac gagacattagtcctcacattagctgctgttgaaaaattggaagaaaaacttttgtatcaacttaataaaacaaagttaaa ccttgcttttaatagaaaagacaaatacgatgtctcatga |
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Protein
| Protein ID | pfu_aug2.0_95.1_16899.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_95.1_16899.t1 MTEFRQCRRFISLKTRNVSTSCDNQQTSKATPSNIIDSQILGSRRALPVVTSREIQFPNKYREPKQAWLESLSQHEDEKL GLIDLHPDIFGAYPRIDVLHRNVKWQSLYRKIAVGQALSTVDHLQEWIKGKKVGGKALGPRGPKSYFYMLPTEERVLGLC TALSVKYAQGYLQIVESLDIPTDDPQYLEDLFDVRFWGFSALFVDDTDQMPENIAIATSHIPQYNLMPVYGLNVYSMLKH ETLVLTLAAVEKLEEKLLYQLNKTKLNLAFNRKDKYDVS |
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