Gene
| Gene Model ID | pfu_aug2.0_95.1_16900 |
|---|---|
| Locus | scaffold95.1 : 198967 ... 207897 : + |
| To GenomeBrowser | scaffold95.1:198967..207897 |
| Genes list of scaffold | scaffold95.1 |
| Synonym | pfu_aug1.0_9733.1_24626 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| dna-directed rna polymerase ii subunit rpb7 | GO:0003676 GO:0003899 GO:0005665 GO:0005730 GO:0006366 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_95.1_16900.t1 | 1 | 1 | SHS2_Rpb7-N | 22 | 88 | 2.4e-16 | 59.5 | 8.4e-20 | 4.1e-16 | 58.8 |
| pfu_aug2.0_95.1_16900.t1 | 1 | 1 | S1 | 89 | 134 | 1.0e-10 | 41.5 | 4.2e-14 | 2.1e-10 | 40.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_95.1_16900.t1 | gi|676431527|ref|XP_009046281.1| | hypothetical protein LOTGIDRAFT_212320 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_95.1_16900.t1 | gi|602700602|ref|XP_007462272.1| | PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Lipotes vexillifer] | 0.0 |
| pfu_aug2.0_95.1_16900.t1 | gi|72013666|ref|XP_780458.1| | PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Strongylocentrotus purpuratus] | 0.0 |
| pfu_aug2.0_95.1_16900.t1 | gi|554525423|ref|XP_005857567.1| | PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Myotis brandtii] | 0.0 |
| pfu_aug2.0_95.1_16900.t1 | gi|524875652|ref|XP_005094551.1| | PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Aplysia californica] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_95.1_16900.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_95.1_16900.t1 atgaccagtcatttattttatattaaaaatccacttaccaacagggtatccctagaacatgagatccttctccatcccaa atattttggtccaaatctgttaaacattgtcaaacagaaactatttacagaagtggagggaacatgcacaggaaagtatg gttttgtgatagccgtaacaactattgacaatattggtgctgggatgatacagccggggaggggctttgtagtgtatcct gtcaaatacaaagccattgtcttcagacctttcaaaggtgaagttctcgatgcagtggttactcaagtcaataaggttgg attgttcaccgagataggacctctttcttgctttatctccagacactcaataccagctgatatggactttgatccaaact ccaatcccccatgctacaagacaaaagatgagttcgccattggaacactcatggacgattacttaggtcttgtcagctga |
|
Protein
| Protein ID | pfu_aug2.0_95.1_16900.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_95.1_16900.t1 MTSHLFYIKNPLTNRVSLEHEILLHPKYFGPNLLNIVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGMIQPGRGFVVYP VKYKAIVFRPFKGEVLDAVVTQVNKVGLFTEIGPLSCFISRHSIPADMDFDPNSNPPCYKTKDEFAIGTLMDDYLGLVS |
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