Gene
| Gene Model ID | pfu_aug2.0_95.1_16913 |
|---|---|
| Locus | scaffold95.1 : 465221 ... 470140 : + |
| To GenomeBrowser | scaffold95.1:465221..470140 |
| Genes list of scaffold | scaffold95.1 |
| Synonym | pfu_aug1.0_61944.1_56318 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_95.1_16913.t1 | 3 | 1 | WD40 | 216 | 230 | 4.9e-08 | 32.5 | 0.74 | 3700.0 | -2.0 |
| pfu_aug2.0_95.1_16913.t1 | 3 | 2 | WD40 | 365 | 381 | 4.9e-08 | 32.5 | 0.006 | 30.0 | 4.7 |
| pfu_aug2.0_95.1_16913.t1 | 3 | 3 | WD40 | 404 | 430 | 4.9e-08 | 32.5 | 4.5e-09 | 2.2e-05 | 24.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_95.1_16913.t1 | gi|395506470|ref|XP_003757555.1| | PREDICTED: F-box/WD repeat-containing protein 5 [Sarcophilus harrisii] | 1.0e-11 |
| pfu_aug2.0_95.1_16913.t1 | gi|676421309|ref|XP_009043809.1| | hypothetical protein LOTGIDRAFT_152090 [Lottia gigantea] | 1.0e-11 |
| pfu_aug2.0_95.1_16913.t1 | gi|557013043|ref|XP_006007070.1| | PREDICTED: F-box/WD repeat-containing protein 5 [Latimeria chalumnae] | 6.0e-11 |
| pfu_aug2.0_95.1_16913.t1 | gi|241614864|ref|XP_002406691.1| | F-box and WD domain protein, putative [Ixodes scapularis] | 7.0e-11 |
Transcript
| Transcript ID | pfu_aug2.0_95.1_16913.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_95.1_16913.t1 atgaagcttccgatatttgaaagacaggtatcaacatcgcattacacaaactgggtagaattcaaccaatcagaaacctt gttactcgttcatgctgttgaaagagttcatacagaaacatatccagccgccattttggttttggcattggaagatggaa tgcgcatgctctgtgcttctggtcaaaatctgacagacatacgtggttgttggtatgatgaccggagttatcttgtagtg gataatccctctaattattcatcagagatagaaattcacaaaaaagaggtttcctgtggaactgatgacgtcgaggagca agctctggatgatttatgccgttatgacgacgaaggaaatgttatactcagaatagaggaggaatttagaatgcgcatgc tctgtgcttctggtcaaaatctgactgacatacgtggttgttggtatgatgaccggagttatcttgtagtggataatccc tctaattattcatcagagatagaaattcacaaaaaagaggtttcctgtggaactgatgacgtcgaggagcaagctctgga tgatttatgccgttatgacgacgaaggaaatgttatactcagaatagaggaggaatttagtgagcatcacatgatcaaag tgttcgattgtcacaggaactttatcgaaccaaaattccctgtgaattgtgaagacgaacaatcgaacactacaagtgag aaaatcattgtgatattttgtggcggtgccgatgatctagactccagtggtatctatatgtacctaatagcagatgatgt acatcagaataggactgttcaaccaatacggaaaatccctattaaatcggactgtataggattgacattgtcagccgaca agagatttctaaccatgactactcgagatgtagaggaggaaacatatgatggagataataatgatgagatagacgatgat tattacaaaaacacactggacgtgagactgagagtacttgatctcgtagataatgataataagtttatagattaccatgg caacaagtcgatgctcaaaacttactgttgtttccttttatcaatggcaaacgatcgttttgttgcaagtggtaccgaga caggcaagatattagtttgggatcgtcagtcatgtggtctccttactacactaacacacattcctgtagcgattcccgcc aaaacctgcgtgaatgcagtgacatttcatccaaacgacccggaagtgttggtgtctgttgctgatgataaaacaatcaa aatttggaaatccagaaaccgaatacattgtgaatctttacgaatgaaacattaa |
|
Protein
| Protein ID | pfu_aug2.0_95.1_16913.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_95.1_16913.t1 MKLPIFERQVSTSHYTNWVEFNQSETLLLVHAVERVHTETYPAAILVLALEDGMRMLCASGQNLTDIRGCWYDDRSYLVV DNPSNYSSEIEIHKKEVSCGTDDVEEQALDDLCRYDDEGNVILRIEEEFRMRMLCASGQNLTDIRGCWYDDRSYLVVDNP SNYSSEIEIHKKEVSCGTDDVEEQALDDLCRYDDEGNVILRIEEEFSEHHMIKVFDCHRNFIEPKFPVNCEDEQSNTTSE KIIVIFCGGADDLDSSGIYMYLIADDVHQNRTVQPIRKIPIKSDCIGLTLSADKRFLTMTTRDVEEETYDGDNNDEIDDD YYKNTLDVRLRVLDLVDNDNKFIDYHGNKSMLKTYCCFLLSMANDRFVASGTETGKILVWDRQSCGLLTTLTHIPVAIPA KTCVNAVTFHPNDPEVLVSVADDKTIKIWKSRNRIHCESLRMKH |
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