Gene
| Gene Model ID | pfu_aug2.0_956.1_21294 |
|---|---|
| Locus | scaffold956.1 : 78993 ... 98375 : - |
| To GenomeBrowser | scaffold956.1:78993..98375 |
| Genes list of scaffold | scaffold956.1 |
| Synonym | pfu_aug1.0_5080.1_16582 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_956.1_21294.t1 | 4 | 1 | DEAD | 272 | 322 | 4.8e-22 | 78.2 | 1.8e-10 | 3.7e-07 | 29.7 |
| pfu_aug2.0_956.1_21294.t1 | 4 | 2 | DEAD | 615 | 665 | 4.8e-22 | 78.2 | 1.5e-10 | 3.1e-07 | 30.0 |
| pfu_aug2.0_956.1_21294.t1 | 4 | 3 | DEAD | 665 | 727 | 4.8e-22 | 78.2 | 3.4e-06 | 0.0071 | 15.8 |
| pfu_aug2.0_956.1_21294.t1 | 1 | 1 | Helicase_C | 842 | 913 | 1.0e-16 | 60.5 | 1.2e-19 | 2.5e-16 | 59.3 |
| pfu_aug2.0_956.1_21294.t1 | 4 | 4 | DEAD | 857 | 875 | 4.8e-22 | 78.2 | 3.3 | 6900.0 | -3.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_956.1_21294.t1 | gi|663288983|ref|XP_008501051.1| | PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX51-like [Calypte anna] | 0.0 |
| pfu_aug2.0_956.1_21294.t1 | gi|524913439|ref|XP_005111550.1| | PREDICTED: ATP-dependent RNA helicase DDX51-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_956.1_21294.t1 | gi|390348197|ref|XP_797208.3| | PREDICTED: ATP-dependent RNA helicase DDX51 [Strongylocentrotus purpuratus] | 0.0 |
| pfu_aug2.0_956.1_21294.t1 | gi|557269278|ref|XP_006019955.1| | PREDICTED: ATP-dependent RNA helicase DDX51-like [Alligator sinensis] | 0.0 |
| pfu_aug2.0_956.1_21294.t1 | gi|564240483|ref|XP_006277075.1| | PREDICTED: ATP-dependent RNA helicase DDX51-like [Alligator mississippiensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_956.1_21294.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_956.1_21294.t1 atgggagatgaggaggatacgagaacaccggcatctaaatcagcagatatcctggccaagataaaagcagacgcagagaa acgaagatccttaacgaagattggcgaaaaggaaaaaaatgttgatgaccataaagatgatttaaagaatagaaattcat tacctgaagatgacagaaaagtaaagaagagattgaatgacactgcggaagaggaagtaaaggctcaatcaagtaagaag aggaaaaagtcttcctctggtggagaagatgtggagaaggaagatgttcatgatgaatttccacagaagaagaagaagca taagaaggaacgtaaagatagctgtgaaatgtgtggagatgatattaatgataaagaatcttgtcaggtcattaggaaga agacgtcaggtgatgataagatgggagatgataaagacaattcagagatgtcgaaaagtaaagataaaagtcctacgaaa agtaaacattctgaaggtgggaaaaagattaaatcaaagaaaatgaagcaagcaaagcaagagtcccttgaagatgaaaa agaagattcatctggcgatgatgatgctttagttagtaaggaaattaatggtaaagaagttggaggtttcacagtgctgg gagaagataagccgaaaacacccccacagttgggaaggctattacctgattggctggcatccccgtcccttgtttctgct gacctatcagcatcttctcccgttgaaacactgagcggcctagataccaggcttgttgtaaagctaaaagaaaatggaat aattgattttttcccagtacagctgcaagtaataccagagatcttgtctgaggtgcattatgggtacaagacgggagttg caggattccgtcccagtgatttatgcgtgtcagctccgacaggaagtggcaaaactctgacatttgtattacccataatt caggttggtcttatagctggaatgaagcctctccattcagaacaaagaaccttggtgaagcacgggtatatgggagatga ggaggatacgagaacaccggcctcaaaatcagcagatatcctggccaagataaaagcagacgcagagaaacgaagatcct taacgaagattggtgaaaaggaaaaaaatgttgatgatcataaagatgatttaaagaatggaaagtcattacttgaagat ggcagaaaagtaaagaagagattgaatgacactgcggaagaggaagaaaaggcccaatcaagtaagaagaggaaaaagtc ttcctctggtggagaagatgtggagaaggaagatgatcatgatgaatttccacagaagaagaagaagcataagaaggaac gtaaaaatagctgtgagatgtgcggagatgatattaatgataaagaatctcgtcaggtcattatgaagaagacgtcaggt gatgataagaagggagatgataaagacaatttagagctgttgaaaagtaaagataaaagtcccgtgaaaagtaaacattc tgaaggtgggaagaagataaaatcaaagaaaatgaagcaagcaaagaaagattcccttgaagatgaaaaagaagattcat ctggtgatgatgatgatttacttagtgaggaaataaacggtaaagaagtcggaggtttcacagtgctgggagaggagaag ccgaaaacacccccacagttgggaaggctattacctgattggctggcatccccgtcccttgtttccgctgacctatcagc gtcttctcccattaaaacactgagcggcctagataccaggctcgttataaagctaaaagaaaatggaataactgattttt tcccagtacagctgcaagtaataccagagatcttgtctgaggtgcattatgggtacaagacgggagttgcaggattccgt cccagtgatttatgcgtgtcagctccgacaggaagtggcaaaactctgacatttgtattacccataattcaggtattgga cgaggcagacagaatgatggaactactaaaacaagactggctactggaggtagagaaagctgtatacagtaaagggaggg acccacctggcccacttaatgttagaaactcataccatatccaggtcccttttcagaagttgctgttttctgccacattg tcgcaaaacccagagaagatcaaacagcttaatttgttccaacccaaactgttcacagccgtaggaggaggaactaataa gggaggggtacttgtggtgggaggggtatccccttcacttgaccagaaacagactgatgttaatagtaaaggtgctccat cattaagggagaacaataatgacattcctggaaaatacacaatgcctgccgagctgacggaagaatgtatggaatgtact tcagcagaaaggccgttattgatccttcattttctactcaatctcaagtatagccagattctatgttttacaaattctaa ggactcggcacacagactgtgtcttcttctgaaacttgtcggtggattcacgactcaggaggtcactggtaacacccatc acacaaagatgaccaaagccatcaagaagttctcacagggacagattgacatactggtgtgttctgatgccatggctaga gggatggacttggtcaatgcaaggtatgtgttatcatacgatccccctaagctgctgacgacctacatacaccgagtggg acgaactgcacgagcaggaaaggaagggactgctattacatttgtgcaagatcaagagttttatcatttcaagaagatga catcagctattagaagaacaggactgaataagataaaagtaccaaaagataaactggaaccgctagtgcctaaactacaa gcagctctaaagaaactatcatttaagatcccaaggaaaggtcgatccaagataaaacgtggtacgaaaaaggggaaata a |
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Protein
| Protein ID | pfu_aug2.0_956.1_21294.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_956.1_21294.t1 MGDEEDTRTPASKSADILAKIKADAEKRRSLTKIGEKEKNVDDHKDDLKNRNSLPEDDRKVKKRLNDTAEEEVKAQSSKK RKKSSSGGEDVEKEDVHDEFPQKKKKHKKERKDSCEMCGDDINDKESCQVIRKKTSGDDKMGDDKDNSEMSKSKDKSPTK SKHSEGGKKIKSKKMKQAKQESLEDEKEDSSGDDDALVSKEINGKEVGGFTVLGEDKPKTPPQLGRLLPDWLASPSLVSA DLSASSPVETLSGLDTRLVVKLKENGIIDFFPVQLQVIPEILSEVHYGYKTGVAGFRPSDLCVSAPTGSGKTLTFVLPII QVGLIAGMKPLHSEQRTLVKHGYMGDEEDTRTPASKSADILAKIKADAEKRRSLTKIGEKEKNVDDHKDDLKNGKSLLED GRKVKKRLNDTAEEEEKAQSSKKRKKSSSGGEDVEKEDDHDEFPQKKKKHKKERKNSCEMCGDDINDKESRQVIMKKTSG DDKKGDDKDNLELLKSKDKSPVKSKHSEGGKKIKSKKMKQAKKDSLEDEKEDSSGDDDDLLSEEINGKEVGGFTVLGEEK PKTPPQLGRLLPDWLASPSLVSADLSASSPIKTLSGLDTRLVIKLKENGITDFFPVQLQVIPEILSEVHYGYKTGVAGFR PSDLCVSAPTGSGKTLTFVLPIIQVLDEADRMMELLKQDWLLEVEKAVYSKGRDPPGPLNVRNSYHIQVPFQKLLFSATL SQNPEKIKQLNLFQPKLFTAVGGGTNKGGVLVVGGVSPSLDQKQTDVNSKGAPSLRENNNDIPGKYTMPAELTEECMECT SAERPLLILHFLLNLKYSQILCFTNSKDSAHRLCLLLKLVGGFTTQEVTGNTHHTKMTKAIKKFSQGQIDILVCSDAMAR GMDLVNARYVLSYDPPKLLTTYIHRVGRTARAGKEGTAITFVQDQEFYHFKKMTSAIRRTGLNKIKVPKDKLEPLVPKLQ AALKKLSFKIPRKGRSKIKRGTKKGK |
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