Gene
| Gene Model ID | pfu_aug2.0_959.1_31308 |
|---|---|
| Locus | scaffold959.1 : 33885 ... 119455 : - |
| To GenomeBrowser | scaffold959.1:33885..119455 |
| Genes list of scaffold | scaffold959.1 |
| Synonym | pfu_aug1.0_18654.1_47238 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_959.1_31308.t1 | 2 | 1 | HLH | 52 | 103 | 1.2e-15 | 56.9 | 6.3e-19 | 1.2e-15 | 56.9 |
| pfu_aug2.0_959.1_31308.t1 | 2 | 2 | HLH | 121 | 130 | 1.2e-15 | 56.9 | 3.1 | 5800.0 | -3.0 |
| pfu_aug2.0_959.1_31308.t1 | 3 | 1 | PAS | 125 | 158 | 2.3e-10 | 40.2 | 0.0006 | 1.1 | 9.0 |
| pfu_aug2.0_959.1_31308.t1 | 2 | 1 | PAS_3 | 145 | 158 | 2.8e-10 | 40.1 | 0.41 | 760.0 | 0.2 |
| pfu_aug2.0_959.1_31308.t1 | 3 | 2 | PAS | 242 | 304 | 2.3e-10 | 40.2 | 1.1e-09 | 2.1e-06 | 27.5 |
| pfu_aug2.0_959.1_31308.t1 | 1 | 1 | PAS_11 | 245 | 329 | 8.5e-16 | 57.9 | 9.9e-19 | 1.8e-15 | 56.8 |
| pfu_aug2.0_959.1_31308.t1 | 2 | 2 | PAS_3 | 246 | 319 | 2.8e-10 | 40.1 | 1.5e-12 | 2.7e-09 | 36.9 |
| pfu_aug2.0_959.1_31308.t1 | 3 | 3 | PAS | 385 | 411 | 2.3e-10 | 40.2 | 1.1 | 2100.0 | -1.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_959.1_31308.t1 | gi|542167071|ref|XP_005492125.1| | PREDICTED: aryl hydrocarbon receptor nuclear translocator-like protein 1 [Zonotrichia albicollis] | 0.0 |
| pfu_aug2.0_959.1_31308.t1 | gi|557005367|ref|XP_006004401.1| | PREDICTED: LOW QUALITY PROTEIN: aryl hydrocarbon receptor nuclear translocator-like protein 1 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_959.1_31308.t1 | gi|731489453|ref|XP_010590612.1| | PREDICTED: aryl hydrocarbon receptor nuclear translocator-like protein 1 [Loxodonta africana] | 0.0 |
| pfu_aug2.0_959.1_31308.t1 | gi|704558945|ref|XP_010182104.1| | PREDICTED: aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X3 [Mesitornis unicolor] | 0.0 |
| pfu_aug2.0_959.1_31308.t1 | gi|632941704|ref|XP_007886007.1| | PREDICTED: aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X3 [Callorhinchus milii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_959.1_31308.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_959.1_31308.t1 atgcagatacggaaacgtaaaaacatgtcacttgattccagttttaactttgatacttacgacgatgagtccttggactc ggacatcagacagttcacaaggatgaagtccatggaaacgcaaagtgttagcagcaccggaaccggaaatgaaagacaaa atcacagtgagatagaaaagaggcggagggacaaaatgaatgcgtatattgcggagctgtcatcaatgctacccatgtgc aatgcaatgaaccgtaaacttgataagcttaccgtgctcagaatggccgtccaacatctaaaatctcttagaggagcaac aacatccatccccgaggcaaggccatctttcctatcggaagaggagcttaagcaattagttctcgaggcagccgagggtt tcatgtttgttgtaagctgtgatagggccaggatactgtacgtctcagagtctgtcaggaatacattaggttacttcaga gtggcattgggccttaagttattccaacattattggtgccctctcaatacaaaacaggttccgatgatgccagtaaagac agagttaccgcagaggccaacacatttatgttctggtgctagacgctcatttttctgccgaatgcgatgtggactgaaat catatgacggctccccaggcatgaaggcagaaaaggagacggacatcgatatgtgcccaaggaagaaaaagtctgggcaa atgactgccacagttttattgggatacctcccccaggaattgctgggcacgtcagtgtatgaattttaccatcaggaaga tatacaagaaatggcagaaatacacagaaaagttttacgcacaaaagagaaactgaaaacgaacgtctacagattcaaga gtaaagatggatcttttatgcaccttcggtctgtttgttttagttttaagaatccttggaccaaagatgtggagtatgtt gtgtctaggaacactgttgtcccagtacaggaagtgagtagttcgggtcaggcgctggacgccggtaacactacactaga agcagatagcgaggcaaattgggaagagaacgatgaagcacgagctccggagagaaaacgacaagccatgatgccgggag ctgtttcaggtactcgactgggcgctggacgaatcggcaggcagatcgcagaagagctctcggaaacgcaaaggcctgat gctttaaatgtagccgcagacagtacaaatccagtaccttctacttcagaaagagtgaaaccagagatgccaaaaaccag aaatggtttaagcacatcagtagcagaagctgccagtgtagtgtccaggattgtgccggcaacaacgcgcaatggaatat caatcgcagctggagtttcagaagaacacatactgataacctgggtctacctcagttcatga |
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Protein
| Protein ID | pfu_aug2.0_959.1_31308.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_959.1_31308.t1 MQIRKRKNMSLDSSFNFDTYDDESLDSDIRQFTRMKSMETQSVSSTGTGNERQNHSEIEKRRRDKMNAYIAELSSMLPMC NAMNRKLDKLTVLRMAVQHLKSLRGATTSIPEARPSFLSEEELKQLVLEAAEGFMFVVSCDRARILYVSESVRNTLGYFR VALGLKLFQHYWCPLNTKQVPMMPVKTELPQRPTHLCSGARRSFFCRMRCGLKSYDGSPGMKAEKETDIDMCPRKKKSGQ MTATVLLGYLPQELLGTSVYEFYHQEDIQEMAEIHRKVLRTKEKLKTNVYRFKSKDGSFMHLRSVCFSFKNPWTKDVEYV VSRNTVVPVQEVSSSGQALDAGNTTLEADSEANWEENDEARAPERKRQAMMPGAVSGTRLGAGRIGRQIAEELSETQRPD ALNVAADSTNPVPSTSERVKPEMPKTRNGLSTSVAEAASVVSRIVPATTRNGISIAAGVSEEHILITWVYLSS |
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