Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_959.1_31312
Locus scaffold959.1 : 199670 ... 202693 : +
To GenomeBrowser scaffold959.1:199670..202693
Genes list of scaffold scaffold959.1
Synonym pfu_aug1.0_18278.1_03905

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_959.1_31312.t1 1 1 Cyclin_N 1 45 9.9e-16 57.4 1.8e-19 1.3e-15 57.0

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_959.1_31312.t1 gi|156364707|ref|XP_001626487.1| predicted protein [Nematostella vectensis] 5.0e-28
pfu_aug2.0_959.1_31312.t1 gi|259013474|ref|NP_001158480.1| cyclin B [Saccoglossus kowalevskii] 6.0e-28

Transcript
Transcript IDpfu_aug2.0_959.1_31312.t1
Definition-
>pfu_aug2.0_959.1_31312.t1
atgctcatagcttctaagtatgaagaaatgtatgctccagaagttgcagactttgtgtatataacagacaatgcatatca
gaaaaaagacattcgtgatatggaagctttgatactaaaaacactagattttagctttggtaaaccattgtgcctgcatt
tcttaagaaggaattctaaagcaggacagaaaatgtcagaatgggacatcatatctcccaaactgatagtacgagtaaga
tgcaatatgcatgatatgtga

Protein
Protein IDpfu_aug2.0_959.1_31312.t1
Definition-
>pfu_aug2.0_959.1_31312.t1
MLIASKYEEMYAPEVADFVYITDNAYQKKDIRDMEALILKTLDFSFGKPLCLHFLRRNSKAGQKMSEWDIISPKLIVRVR
CNMHDM

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