Gene
| Gene Model ID | pfu_aug2.0_96.1_20215 |
|---|---|
| Locus | scaffold96.1 : 92092 ... 102085 : - |
| To GenomeBrowser | scaffold96.1:92092..102085 |
| Genes list of scaffold | scaffold96.1 |
| Synonym | pfu_aug1.0_554.1_15117 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| nuclear receptor ror-beta-like | GO:0005488 GO:0009987 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_96.1_20215.t1 | 1 | 1 | zf-C4 | 14 | 81 | 5.1e-23 | 81.0 | 3.6e-26 | 1.8e-22 | 79.3 |
| pfu_aug2.0_96.1_20215.t1 | 1 | 1 | Hormone_recep | 453 | 621 | 4.0e-15 | 55.4 | 2.3e-18 | 1.2e-14 | 53.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_96.1_20215.t1 | gi|701317794|ref|XP_010018921.1| | PREDICTED: nuclear receptor ROR-beta-like, partial [Nestor notabilis] | 1.0e-22 |
| pfu_aug2.0_96.1_20215.t1 | gi|449491752|ref|XP_002191570.2| | PREDICTED: nuclear receptor ROR-beta-like [Taeniopygia guttata] | 2.0e-22 |
| pfu_aug2.0_96.1_20215.t1 | gi|694838690|ref|XP_009459947.1| | PREDICTED: nuclear receptor ROR-beta-like [Nipponia nippon] | 3.0e-22 |
| pfu_aug2.0_96.1_20215.t1 | gi|513227036|ref|XP_003642912.2| | PREDICTED: nuclear receptor ROR-beta-like isoform X1 [Gallus gallus] | 3.0e-22 |
Transcript
| Transcript ID | pfu_aug2.0_96.1_20215.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_96.1_20215.t1 atggactcgacaactaaggacagccccctggagtacccaccctgtaaggtgtgtggaggtacaggggccggggtacatta cggtgtttatacctgtcaaagctgtaagacgtttttcagacgctttctgaaaagagagaagccatatgtatgctcccgga atggaaactgtaaggtggtcaactcaagtcgtggtaactgctcagcatgccgtgttcaaaaatgcaggcaggtcggaatg tcggtggaaggtgtcaaaatcggcaggcgtacactaaaagagagaaacaaaacgatcctcgaagtgaatgaattacaatc agagaagaaaaagtcacataccagatttgaaactctacgaaccgaggtgcaggctcgaattgagaaatttcttgaagaac gtccagatcttatagatatatttccatggaccagaaattggccagatagtatagccactatggacaaatgctcgcaatgt caggatacgtcgaaaacagtcgtagtagtaccggattccgcccaatcaacatccatgccgacaaataacatcttctattt atttgtgcaagaagctatgatggcttcctcctctntacgaaccgaggtgcaggctcgaattgagaaatttcttgaagaac gtccagatcttatagatatatttccatggaccagaaattggccagatagtatagccactatggacaaatgctcgcaatgt caggatacgtcgaaaacagtcgtagtagtaccggattccgcccaatcaacatccatgccgacaaataacatcttctattt atttgtgcaagaagctatgatggcttcctcctccacaagtaataataacgtccagattgatgacaaaaagagtagcgaag tcgtcatagatcctgaaataaatcgggaagattggaacgaaaacatgcttgaagaccttttagaggaatgtgagtttgag agcactgtttccataccagatgcaacagacgtcgctgacgatggaatagatgcgatggacttttgtcctctgtcaccagg aagtctagaggaatgcttcacggagttaatggagtggacagaccaagagagtcagttcttcaaccagaggtctgccccac cacagggtcaaatgccagacagtgccattgaagacctcgttgggacattcaaggaaatgaaagtacacgcccatctaact gatgacgaaattaaaacgaaacttaaggaagaatatgaaaagatgcaattgttgacagctgccataggacctatgagatc catgacgaatgaggaatacatagattttttccttactaccggtttagatatagagggaagagccaaatacctgagacaca tcaagactaatgtatctcattacataaaaagagttataaaatttgcacataaaatccctggattccgagacctgctccca aaagaccaagcttctctaattagagctgcaaaatacgaggtacaagtgattttgatgaaccgagctgtggatcctgacct tgagatgtggatggtttggtgtggagacgtgttggacgtcaatagatcttggatgtttggaagcatggaaaacaggaaaa agtggttctcattggctaaggaaacacgtgatctcaatctgtctactgaagagatggccgtcgtcatgggaatgtctttg acgtttacagatcgctgcagcctatgtcagccaatggaagttgacaagattaatttgaatctgacagatcaccttcagac actgttaaaggaacgatataaagttaaagctagcagccagctctgtaaaatcatggaattattcgttaatttgaggtcgt tttcacatgaaagggacgcccaactgaaagcatttgtctcaaatgaagtagtgaaaacccactttccaaaccttagacgt cttcaagcgttagtgatagagtga |
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Protein
| Protein ID | pfu_aug2.0_96.1_20215.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_96.1_20215.t1 MDSTTKDSPLEYPPCKVCGGTGAGVHYGVYTCQSCKTFFRRFLKREKPYVCSRNGNCKVVNSSRGNCSACRVQKCRQVGM SVEGVKIGRRTLKERNKTILEVNELQSEKKKSHTRFETLRTEVQARIEKFLEERPDLIDIFPWTRNWPDSIATMDKCSQC QDTSKTVVVVPDSAQSTSMPTNNIFYLFVQEAMMASSSXRTEVQARIEKFLEERPDLIDIFPWTRNWPDSIATMDKCSQC QDTSKTVVVVPDSAQSTSMPTNNIFYLFVQEAMMASSSTSNNNVQIDDKKSSEVVIDPEINREDWNENMLEDLLEECEFE STVSIPDATDVADDGIDAMDFCPLSPGSLEECFTELMEWTDQESQFFNQRSAPPQGQMPDSAIEDLVGTFKEMKVHAHLT DDEIKTKLKEEYEKMQLLTAAIGPMRSMTNEEYIDFFLTTGLDIEGRAKYLRHIKTNVSHYIKRVIKFAHKIPGFRDLLP KDQASLIRAAKYEVQVILMNRAVDPDLEMWMVWCGDVLDVNRSWMFGSMENRKKWFSLAKETRDLNLSTEEMAVVMGMSL TFTDRCSLCQPMEVDKINLNLTDHLQTLLKERYKVKASSQLCKIMELFVNLRSFSHERDAQLKAFVSNEVVKTHFPNLRR LQALVIE |
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