Gene
Gene Model ID | pfu_aug2.0_960.1_01269 |
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Locus | scaffold960.1 : 816 ... 14365 : + |
To GenomeBrowser | scaffold960.1:816..14365 |
Genes list of scaffold | scaffold960.1 |
Synonym | pfu_aug1.0_5699.1_16735 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_960.1_01269.t1 | 2 | 1 | Lectin_C | 1 | 113 | 8.3e-25 | 87.4 | 9.2e-11 | 4.5e-07 | 30.4 |
pfu_aug2.0_960.1_01269.t1 | 1 | 1 | Herpes_UL45 | 118 | 248 | 1.8e-06 | 27.5 | 4.5e-10 | 2.2e-06 | 27.2 |
pfu_aug2.0_960.1_01269.t1 | 2 | 2 | Lectin_C | 141 | 246 | 8.3e-25 | 87.4 | 1.6e-20 | 7.8e-17 | 61.8 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_960.1_01269.t1 | gi|260841562|ref|XP_002613981.1| | hypothetical protein BRAFLDRAFT_118457 [Branchiostoma floridae] | 9.0e-22 |
pfu_aug2.0_960.1_01269.t1 | gi|260787783|ref|XP_002588931.1| | hypothetical protein BRAFLDRAFT_89120 [Branchiostoma floridae] | 2.0e-17 |
pfu_aug2.0_960.1_01269.t1 | gi|734611462|ref|XP_010733136.1| | PREDICTED: lactose-binding lectin l-2-like [Larimichthys crocea] | 2.0e-17 |
Transcript
Transcript ID | pfu_aug2.0_960.1_01269.t1 |
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Definition | - |
>pfu_aug2.0_960.1_01269.t1 atgggagggtacctggtagaacctccggatattgactttgaatcatttcttaatctccaacgagagcacaataaagtggc tagtaaaatttggctgggtggaacggatgaatcagccgaaggcacatgggaatgggtaaccaccaataaagtattccaat actctaattggcaacgggactatccacgtacatcgggtcgagaaggcaatgccaaatcgcgggcggttgagaacaccgga atgaacaacattcctagagaacattacgattgtttggggtcagagttgggatggaatgaccttcgatgtgattcaaagga gagccttgtctgtcaaaaagcttccgacgtcactggaggtaactgtcaaactggatggataaaatttgaaggaatgtgct tcctgtttgtacttaatacatcactcacatggtttgaggccaagaacttttgtcaaggacagaattcccaccttgctgaa gtcataaacgccaaaatacatctttttatcatgcaagagctccttattcaagctacttcgaagagtttctggcttggcgg tacagacttggcagaggaaggaacctggatatgggaccattcaaaatataagatagacttcaataggtggatggatgata acccgtcaaatcatgatggtttggaacattgtatggttatggtcagtggatggaatgataacaaatgtcaggaaaaatat cagtttatttgtcaaaaaggtagagtagaaagcctggatatattcagatgttccggtgacataacgtga |
Protein
Protein ID | pfu_aug2.0_960.1_01269.t1 |
---|---|
Definition | - |
>pfu_aug2.0_960.1_01269.t1 MGGYLVEPPDIDFESFLNLQREHNKVASKIWLGGTDESAEGTWEWVTTNKVFQYSNWQRDYPRTSGREGNAKSRAVENTG MNNIPREHYDCLGSELGWNDLRCDSKESLVCQKASDVTGGNCQTGWIKFEGMCFLFVLNTSLTWFEAKNFCQGQNSHLAE VINAKIHLFIMQELLIQATSKSFWLGGTDLAEEGTWIWDHSKYKIDFNRWMDDNPSNHDGLEHCMVMVSGWNDNKCQEKY QFICQKGRVESLDIFRCSGDIT |