Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_960.1_01269
Locus scaffold960.1 : 816 ... 14365 : +
To GenomeBrowser scaffold960.1:816..14365
Genes list of scaffold scaffold960.1
Synonym pfu_aug1.0_5699.1_16735

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_960.1_01269.t1 2 1 Lectin_C 1 113 8.3e-25 87.4 9.2e-11 4.5e-07 30.4
pfu_aug2.0_960.1_01269.t1 1 1 Herpes_UL45 118 248 1.8e-06 27.5 4.5e-10 2.2e-06 27.2
pfu_aug2.0_960.1_01269.t1 2 2 Lectin_C 141 246 8.3e-25 87.4 1.6e-20 7.8e-17 61.8

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_960.1_01269.t1 gi|260841562|ref|XP_002613981.1| hypothetical protein BRAFLDRAFT_118457 [Branchiostoma floridae] 9.0e-22
pfu_aug2.0_960.1_01269.t1 gi|260787783|ref|XP_002588931.1| hypothetical protein BRAFLDRAFT_89120 [Branchiostoma floridae] 2.0e-17
pfu_aug2.0_960.1_01269.t1 gi|734611462|ref|XP_010733136.1| PREDICTED: lactose-binding lectin l-2-like [Larimichthys crocea] 2.0e-17

Transcript
Transcript IDpfu_aug2.0_960.1_01269.t1
Definition-
>pfu_aug2.0_960.1_01269.t1
atgggagggtacctggtagaacctccggatattgactttgaatcatttcttaatctccaacgagagcacaataaagtggc
tagtaaaatttggctgggtggaacggatgaatcagccgaaggcacatgggaatgggtaaccaccaataaagtattccaat
actctaattggcaacgggactatccacgtacatcgggtcgagaaggcaatgccaaatcgcgggcggttgagaacaccgga
atgaacaacattcctagagaacattacgattgtttggggtcagagttgggatggaatgaccttcgatgtgattcaaagga
gagccttgtctgtcaaaaagcttccgacgtcactggaggtaactgtcaaactggatggataaaatttgaaggaatgtgct
tcctgtttgtacttaatacatcactcacatggtttgaggccaagaacttttgtcaaggacagaattcccaccttgctgaa
gtcataaacgccaaaatacatctttttatcatgcaagagctccttattcaagctacttcgaagagtttctggcttggcgg
tacagacttggcagaggaaggaacctggatatgggaccattcaaaatataagatagacttcaataggtggatggatgata
acccgtcaaatcatgatggtttggaacattgtatggttatggtcagtggatggaatgataacaaatgtcaggaaaaatat
cagtttatttgtcaaaaaggtagagtagaaagcctggatatattcagatgttccggtgacataacgtga

Protein
Protein IDpfu_aug2.0_960.1_01269.t1
Definition-
>pfu_aug2.0_960.1_01269.t1
MGGYLVEPPDIDFESFLNLQREHNKVASKIWLGGTDESAEGTWEWVTTNKVFQYSNWQRDYPRTSGREGNAKSRAVENTG
MNNIPREHYDCLGSELGWNDLRCDSKESLVCQKASDVTGGNCQTGWIKFEGMCFLFVLNTSLTWFEAKNFCQGQNSHLAE
VINAKIHLFIMQELLIQATSKSFWLGGTDLAEEGTWIWDHSKYKIDFNRWMDDNPSNHDGLEHCMVMVSGWNDNKCQEKY
QFICQKGRVESLDIFRCSGDIT

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495