Gene
| Gene Model ID | pfu_aug2.0_960.1_01271 |
|---|---|
| Locus | scaffold960.1 : 45636 ... 57083 : + |
| To GenomeBrowser | scaffold960.1:45636..57083 |
| Genes list of scaffold | scaffold960.1 |
| Synonym | pfu_aug1.0_11346.1_68324 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| peroxisomal biogenesis factor 3 | GO:0005777 GO:0016020 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_960.1_01271.t1 | 2 | 1 | Peroxin-3 | 40 | 111 | 0.0 | 229.5 | 5.4e-23 | 8.1e-19 | 67.6 |
| pfu_aug2.0_960.1_01271.t1 | 2 | 2 | Peroxin-3 | 112 | 316 | 0.0 | 229.5 | 0.0 | 0.0 | 161.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_960.1_01271.t1 | gi|530571784|ref|XP_005280460.1| | PREDICTED: peroxisomal biogenesis factor 3 [Chrysemys picta bellii] | 0.0 |
| pfu_aug2.0_960.1_01271.t1 | gi|697479197|ref|XP_009671878.1| | PREDICTED: peroxisomal biogenesis factor 3 isoform X1 [Struthio camelus australis] | 0.0 |
| pfu_aug2.0_960.1_01271.t1 | gi|126310649|ref|XP_001370565.1| | PREDICTED: peroxisomal biogenesis factor 3 [Monodelphis domestica] | 0.0 |
| pfu_aug2.0_960.1_01271.t1 | gi|260829353|ref|XP_002609626.1| | hypothetical protein BRAFLDRAFT_125038 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_960.1_01271.t1 | gi|543257809|ref|XP_005420196.1| | PREDICTED: peroxisomal biogenesis factor 3, partial [Geospiza fortis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_960.1_01271.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_960.1_01271.t1 atgagattggacttttatagattatcagtcataccgatagttctctgttccagtctgtcattactgtttatcataaagaa gcctgaattgaaaggaaaactcaatcatgtttataacacaggtggttactgggtgtacaggtatgcacagaggagagtaa aggaaatacaagaaaaggaggccacagaatgtctggcacatgcaaggcgacaacatcattttgacagtaatcagcggacc tgtaatctgacagtattgtctatgctgccaaacttgagagatgctcttatgacaatatttgatacggagagtatcactga aaaactcaaaacaagtccaccaagtaaagttgaattatgggaggaactgaagataaagagtttttcccgtattgtatgtg tgatatatggctgtagcatcatggctctcctcctccgtgtacagcttaacgtgattggtggatatatatttctggacagt gcccagtcacagaatggaaagaggagagagctgtctattcctaaagaagtccaagagagatatctggctgatatcaagta cttcatgggtcaaggattagaggaattatgtgcctttgtacaaggagctgtagaaaaagagttaaaaagtgttcccctga aggaaaagctgacattaaataacattcaggcgaggcttaacgatgttcgagagaggatagagacgagtccggagatttct agtctgtcctctcctacgacggtcctctgtccttacatgctgcccaaggaagacaactcatctctggaaaatttttcaaa tggagaaaaaatttatcagaaactgacacaggagactagagatttgatagagagctctgatttccatgatgttttgaaga cgtgtttagatcgtggttacagtaaattagtggatagctttggagaacattaccgtcagatagccacgggagataccata caaagggcatag |
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Protein
| Protein ID | pfu_aug2.0_960.1_01271.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_960.1_01271.t1 MRLDFYRLSVIPIVLCSSLSLLFIIKKPELKGKLNHVYNTGGYWVYRYAQRRVKEIQEKEATECLAHARRQHHFDSNQRT CNLTVLSMLPNLRDALMTIFDTESITEKLKTSPPSKVELWEELKIKSFSRIVCVIYGCSIMALLLRVQLNVIGGYIFLDS AQSQNGKRRELSIPKEVQERYLADIKYFMGQGLEELCAFVQGAVEKELKSVPLKEKLTLNNIQARLNDVRERIETSPEIS SLSSPTTVLCPYMLPKEDNSSLENFSNGEKIYQKLTQETRDLIESSDFHDVLKTCLDRGYSKLVDSFGEHYRQIATGDTI QRA |
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