Gene
| Gene Model ID | pfu_aug2.0_960.1_01273 |
|---|---|
| Locus | scaffold960.1 : 80779 ... 92395 : - |
| To GenomeBrowser | scaffold960.1:80779..92395 |
| Genes list of scaffold | scaffold960.1 |
| Synonym | pfu_aug1.0_11346.1_68322 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_960.1_01273.t1 | 9 | 1 | CSD | 43 | 105 | 0.0 | 180.3 | 2.5e-14 | 5.2e-11 | 42.1 |
| pfu_aug2.0_960.1_01273.t1 | 4 | 1 | S1-like | 43 | 85 | 5.8e-09 | 35.5 | 0.00021 | 0.44 | 10.3 |
| pfu_aug2.0_960.1_01273.t1 | 9 | 2 | CSD | 143 | 163 | 0.0 | 180.3 | 0.44 | 920.0 | -0.3 |
| pfu_aug2.0_960.1_01273.t1 | 4 | 2 | S1-like | 177 | 232 | 5.8e-09 | 35.5 | 1.3e-06 | 0.0028 | 17.3 |
| pfu_aug2.0_960.1_01273.t1 | 9 | 3 | CSD | 181 | 241 | 0.0 | 180.3 | 1.1e-17 | 2.3e-14 | 52.8 |
| pfu_aug2.0_960.1_01273.t1 | 9 | 4 | CSD | 298 | 327 | 0.0 | 180.3 | 0.015 | 31.0 | 4.4 |
| pfu_aug2.0_960.1_01273.t1 | 4 | 3 | S1-like | 340 | 358 | 5.8e-09 | 35.5 | 0.015 | 32.0 | 4.3 |
| pfu_aug2.0_960.1_01273.t1 | 9 | 5 | CSD | 343 | 396 | 0.0 | 180.3 | 3.0e-14 | 6.4e-11 | 41.8 |
| pfu_aug2.0_960.1_01273.t1 | 9 | 6 | CSD | 474 | 497 | 0.0 | 180.3 | 0.016 | 34.0 | 4.3 |
| pfu_aug2.0_960.1_01273.t1 | 9 | 7 | CSD | 510 | 537 | 0.0 | 180.3 | 0.00011 | 0.23 | 11.2 |
| pfu_aug2.0_960.1_01273.t1 | 9 | 8 | CSD | 589 | 629 | 0.0 | 180.3 | 0.0015 | 3.2 | 7.5 |
| pfu_aug2.0_960.1_01273.t1 | 9 | 9 | CSD | 636 | 697 | 0.0 | 180.3 | 2.8e-09 | 5.9e-06 | 25.9 |
| pfu_aug2.0_960.1_01273.t1 | 4 | 4 | S1-like | 638 | 666 | 5.8e-09 | 35.5 | 0.023 | 49.0 | 3.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_960.1_01273.t1 | gi|676489851|ref|XP_009065076.1| | hypothetical protein LOTGIDRAFT_108249 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_960.1_01273.t1 | gi|585642464|ref|XP_006811185.1| | PREDICTED: cold shock domain-containing protein E1-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_960.1_01273.t1 | gi|390347684|ref|XP_789065.3| | PREDICTED: cold shock domain-containing protein E1 isoform X1 [Strongylocentrotus purpuratus] | 0.0 |
| pfu_aug2.0_960.1_01273.t1 | gi|632967153|ref|XP_007899819.1| | PREDICTED: cold shock domain-containing protein E1 isoform X4 [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_960.1_01273.t1 | gi|644999081|ref|XP_008215410.1| | PREDICTED: cold shock domain-containing protein E1 isoform X2 [Nasonia vitripennis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_960.1_01273.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_960.1_01273.t1 atgtcagctctgagaaagtcgaacaactcatcgtggaaaaatatgcagccaccaatgcaacaggatcctgccattgtctc ttaccaaactacaccagccatgctcaatatttcaaatgccagagaaacaggagtggtagaaaaactgctacactcttatg gcttcatacaatgttatgaaagagacgcacgcttattctttcacttcagtgaataccatggagacatgaatgcaattaaa gtaggagatggtgtagagtttctaacatctagtgataagcgcactggacgtccagtggcatgtagcgtcaacaaagtagc aggagagaccatctcctatgaagtttatagcgaggaacgatacagtgggtctatagtacaggaggccaagcccaagaaca aagatggatctcgagaagcagacagggacagagtcaaatgtggagatcaggtcacctttattttagcaacggataaaaga aatcgggagatgagagcaagacagctagaactggtgcaacttcagaaaaataaaaagtttcagggagtcgtgtgttcctt gaaggagtcattcggatttatagagcgttcagacgttgtcaaggagatattctttcactacagcgagtataggggagata ttggagacattaatttgggagatgacgtagaatttgatgtacaagtcagaaataacaaagaagtagccgtaaatatctcc aagctgcctgaaggcacagtggtgtttgaggacatcagtgttgataagtacagaggaaaactaaagaggaccctgaagag taacagacgacacagtgatccgtttggaggacttatatcgtatatggcggacaaaaaagtagtggagatagcatacggtg acaaagatcaagacggagattatactctgagagtggatgatgttgtagaattcagcatctctactgatcgcagggacaag ctgcagagggcaacagatataaaactgtgtggagaaacgtttgaaaatacagaagaaaggagagtcaaaggaatcatatc tgttttgaaagatggatatggctttattgattcagcagacagagaaagtcgattatttttccactttagcgagcttattg acaagaagaaagatttaaaagttcaagagaatgtagaatttactgttgtagaggatccctctaccagcgatgggaaacaa atggcgattagaatactgtatctacctaaaggtagtgtatcactctacactttacttcctgaaaaatacatcggcaccat cgatagggagccatctattagaaacaactccgcaaagaacaaagatgaatctaaaggaaacataatatttgaccatgaag ggaaaatcagtcatatcgcatacagttctaaagatttgagagactcgaaggatccccattttggagataaagtagaattt cagatatgtgaagtcaaacgaaataatagcaaatatgctgtcaatatcaaagtcattttccgtaacgtttctaataagag aagaggcccatcagaaattgaaataggcgatgaagtagagtacaccatcactaagaaaggagcaaaattttctgcagaaa atgtcagccgtataccgagtggaacgattccagaggacgctgttatccccggacgtggggtcctttatggcactgtaaaa cgatcattgaaaatagtcaatccagaacaagatgaatactttggactcattcaagtcattagtgatgatggagaggactc tgaaactatcccttttggaataactagtttagtcgacaggaaagaaattgttcagagaggagattctgtggagtttctag tggcagaaacgcatacgggttgtcatcatgccgtacacgtcacagctgtaaggaaatatgtacaatctaaagtagacact gtcaaagaacaatttggttacattgattatgaaatggatgaaggaaagaaactttactttaaaatgtctgaagttctaga tgaagttgttctccagccaggtgatgacgtaaagtttgtcatcatacaaaatcaacgcagtgggaggtactctgcttgta gcgttaggaaggtgattgagaaacctcgtcctgagagactgttaagccgtctacgtagtgtccaagatgataagtgtgga ccaaggttaatagccgtgcgtcagcccagaggcccagatgataccctgggattcaagctacctagagtaccatgggtcca agctaactag |
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Protein
| Protein ID | pfu_aug2.0_960.1_01273.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_960.1_01273.t1 MSALRKSNNSSWKNMQPPMQQDPAIVSYQTTPAMLNISNARETGVVEKLLHSYGFIQCYERDARLFFHFSEYHGDMNAIK VGDGVEFLTSSDKRTGRPVACSVNKVAGETISYEVYSEERYSGSIVQEAKPKNKDGSREADRDRVKCGDQVTFILATDKR NREMRARQLELVQLQKNKKFQGVVCSLKESFGFIERSDVVKEIFFHYSEYRGDIGDINLGDDVEFDVQVRNNKEVAVNIS KLPEGTVVFEDISVDKYRGKLKRTLKSNRRHSDPFGGLISYMADKKVVEIAYGDKDQDGDYTLRVDDVVEFSISTDRRDK LQRATDIKLCGETFENTEERRVKGIISVLKDGYGFIDSADRESRLFFHFSELIDKKKDLKVQENVEFTVVEDPSTSDGKQ MAIRILYLPKGSVSLYTLLPEKYIGTIDREPSIRNNSAKNKDESKGNIIFDHEGKISHIAYSSKDLRDSKDPHFGDKVEF QICEVKRNNSKYAVNIKVIFRNVSNKRRGPSEIEIGDEVEYTITKKGAKFSAENVSRIPSGTIPEDAVIPGRGVLYGTVK RSLKIVNPEQDEYFGLIQVISDDGEDSETIPFGITSLVDRKEIVQRGDSVEFLVAETHTGCHHAVHVTAVRKYVQSKVDT VKEQFGYIDYEMDEGKKLYFKMSEVLDEVVLQPGDDVKFVIIQNQRSGRYSACSVRKVIEKPRPERLLSRLRSVQDDKCG PRLIAVRQPRGPDDTLGFKLPRVPWVQAN |
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