Gene
| Gene Model ID | pfu_aug2.0_960.1_01277 |
|---|---|
| Locus | scaffold960.1 : 144607 ... 152675 : - |
| To GenomeBrowser | scaffold960.1:144607..152675 |
| Genes list of scaffold | scaffold960.1 |
| Synonym | pfu_aug1.0_7830.1_09647 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| ras-related protein rab-10 | GO:0003735 GO:0005525 GO:0005840 GO:0006412 GO:0007264 GO:0015031 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_960.1_01277.t1 | 1 | 1 | GTP_EFTU | 13 | 200 | 6.1e-09 | 35.5 | 6.1e-12 | 1.0e-08 | 34.8 |
| pfu_aug2.0_960.1_01277.t1 | 2 | 1 | Arf | 14 | 48 | 2.4e-15 | 56.1 | 0.011 | 18.0 | 4.4 |
| pfu_aug2.0_960.1_01277.t1 | 2 | 1 | Miro | 15 | 39 | 2.9e-21 | 76.1 | 8.3e-06 | 0.014 | 15.9 |
| pfu_aug2.0_960.1_01277.t1 | 2 | 1 | Ras | 16 | 41 | 0.0 | 221.9 | 6.4e-05 | 0.11 | 11.9 |
| pfu_aug2.0_960.1_01277.t1 | 1 | 1 | Gtr1_RagA | 16 | 168 | 4.1e-06 | 26.0 | 5.4e-09 | 8.9e-06 | 25.0 |
| pfu_aug2.0_960.1_01277.t1 | 2 | 2 | Ras | 46 | 200 | 0.0 | 221.9 | 0.0 | 0.0 | 209.2 |
| pfu_aug2.0_960.1_01277.t1 | 2 | 2 | Miro | 47 | 154 | 2.9e-21 | 76.1 | 5.7e-19 | 9.4e-16 | 58.3 |
| pfu_aug2.0_960.1_01277.t1 | 2 | 2 | Arf | 49 | 162 | 2.4e-15 | 56.1 | 4.4e-17 | 7.2e-14 | 51.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_960.1_01277.t1 | gi|676422164|ref|XP_009043916.1| | hypothetical protein LOTGIDRAFT_205560 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_960.1_01277.t1 | gi|524877098|ref|XP_005095256.1| | PREDICTED: ras-related protein Rab-10-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_960.1_01277.t1 | gi|291220707|ref|XP_002730366.1| | PREDICTED: ras-related protein Rab-10-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_960.1_01277.t1 | gi|260787287|ref|XP_002588685.1| | hypothetical protein BRAFLDRAFT_131227 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_960.1_01277.t1 | gi|557766279|ref|XP_005182835.1| | PREDICTED: ras-related protein Rab-10 [Musca domestica] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_960.1_01277.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_960.1_01277.t1 atggaaagaaatcatcacgaaagatttacaaatgaaataaaacatgttatgcttcttggggacacagacacagggaaatc atgtctgttacaaaggattgtttatggtgtgtatcaggaggctgatgttctacctaccacaggggtaggaaagacgtgtc tcttattcagattttctgatgatgctttcaacacaacatttatatcgacgataggtatagatttcaagataaaaacagtg gaattaggaggaaagaagataaagcttcaaatatgggacaccgctggacaggagcgcttccacaccatcaccacttccta ctacagaggggccatgggaattatgctcgtttatgatattactaaccctaaaacatttgaaaatatttcaaagtggttac gcaacattgatgagcatgccaatgaggatgtagagaaaatgattctaggaaataaatgtgacatggaaaataaaagacaa gtgtccaaagatagaggagaagcaattgccagagaacatggtgtaccatttttagaaactagtgcaaaagctaacattaa tgtagaaacagccttcatggatctagcacaagcaatattaaataagtctccttctcgtgagtctgatcccaacaggggtg tagatataaaaaagaaagacgaaggagcgaaaaaatcctgttgttag |
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Protein
| Protein ID | pfu_aug2.0_960.1_01277.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_960.1_01277.t1 MERNHHERFTNEIKHVMLLGDTDTGKSCLLQRIVYGVYQEADVLPTTGVGKTCLLFRFSDDAFNTTFISTIGIDFKIKTV ELGGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNPKTFENISKWLRNIDEHANEDVEKMILGNKCDMENKRQ VSKDRGEAIAREHGVPFLETSAKANINVETAFMDLAQAILNKSPSRESDPNRGVDIKKKDEGAKKSCC |
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