Gene
| Gene Model ID | pfu_aug2.0_960.1_01279 |
|---|---|
| Locus | scaffold960.1 : 188796 ... 198307 : - |
| To GenomeBrowser | scaffold960.1:188796..198307 |
| Genes list of scaffold | scaffold960.1 |
| Synonym | pfu_aug1.0_31313.1_33790 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| amiloride-sensitive cation channel neuronal | GO:0006811 GO:0015267 GO:0044707 GO:0044763 GO:0050789 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_960.1_01279.t1 | 2 | 1 | ASC | 52 | 213 | 7.5e-40 | 136.8 | 8.90007e-41 | 3.3e-37 | 128.1 |
| pfu_aug2.0_960.1_01279.t1 | 2 | 2 | ASC | 226 | 272 | 7.5e-40 | 136.8 | 4.9e-06 | 0.018 | 13.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_960.1_01279.t1 | gi|524883070|ref|XP_005098169.1| | PREDICTED: amiloride-sensitive sodium channel subunit beta-2-like [Aplysia californica] | 4.0e-33 |
| pfu_aug2.0_960.1_01279.t1 | gi|632966999|ref|XP_007899729.1| | PREDICTED: acid-sensing ion channel 2 isoform X2 [Callorhinchus milii] | 6.0e-26 |
| pfu_aug2.0_960.1_01279.t1 | gi|676433107|ref|XP_009046792.1| | hypothetical protein LOTGIDRAFT_171969 [Lottia gigantea] | 4.0e-25 |
| pfu_aug2.0_960.1_01279.t1 | gi|573882253|ref|XP_006629310.1| | PREDICTED: acid-sensing ion channel 1-like [Lepisosteus oculatus] | 2.0e-24 |
| pfu_aug2.0_960.1_01279.t1 | gi|432858245|ref|XP_004068864.1| | PREDICTED: acid-sensing ion channel 1 isoform X3 [Oryzias latipes] | 7.0e-23 |
Transcript
| Transcript ID | pfu_aug2.0_960.1_01279.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_960.1_01279.t1 atggtgttcatgatgagtataaacaaaaaatctgttgatatgccaaaggacgaggaaaaagcgatttgtgtaaattgtga caacccaaaaataaaaggttatcatgagcttagtcaagaaaagaatgtaagaaccagcactctttttcagaaatttaatg atgaaacaacatttcatggcgtgcgttatgctttcggcaataaaagaacttgtcggcagaggatcatatggaccgtattg atagtgtgttgtctcagcatactgttactggacgtcacggagcggatccaatacttcgttagttccccggtcactgtcaa catcgtctccaaattaaacagttctatcgtgttcccagcggtcactatctgtaaccagaacgctttcagaaggacattgg ctttgcagaacaaacatttcagattgatatccgtcttgtttgaggaccaacgatacaggcgcatcaaactatcaatgaag gatttcagcatgccatttcgggaactttatacaatgaatgcacatcagaaagaggacttgattctaagatgtaaatggaa aggtataccgtgtagtgcagagaattttaccacagtactaactaggtatggtcaatgttacacgttcaacggtatgggag atgacctgaaaacgatagaatctccagaggaatttcagaccaaaagctcgcggatgtgcaagtgtcacaccccttgttat aaaaagaaatacaaacctacgatgtcatacggatctatctctgattattcctctaatcagcttacgtctgaagaagtatc ccaaatcacagagcgctacgagacatctagagaagctgctttccattttgaagaagagtttaagtcccttctacataacg ccttgcaactagacggaaagcagctaccagccttttatgaaatgttagaaaagtttgaattcatggataagaacatgatt aggtgttcttctgaggtcagtatgttcgacgatgtgcaactgaactatctcatatcccagctcaaaggttcacactcagt gtttaggagttacatgtggatcacccagttaattgatagaggtccctttggtgtgagtgacgataaagttgtcgagttct ttgctttgctggacaatatgctgatggaaattgaaaagacgccaaaaccacaagagaagaaagcttatttcaagatggtc ctgagtacaatacaagaaaaaatggacatagcctccaatttaacgtatgtgaagtattatgtgaacacacttctggggat atatccaaacatttggataaaaaatctgacggaacacatgcgggatcagagagagatgatcctccaaaacaacctttgga ggcacttttacaaaaaggacatcaaagtaaagaacgactcactggataccataatttccgaatgctatgatcttctgaaa acatacagaaaagttgtccgtacttaccgggacaaaaatgtattgaattccgcaaaattgaatgaaacgtcacaactatt gataatgtatgctatgaaatatgccaaagatgcagaagagttcaacacttggtatagagatgacttactgggaaatcttg ttcacttgtcccaagtcctagaatacctacaaagtgcatatcacaacatagctagcgacttgaaaaagcaatgcaactct gtggtgtatgttaagaacataagaaaaacgagcgaatttttacaagaatcgacttctaaactcaaagactatttgctcaa acaaaaaggaaccatgcaagaagtaagcaaatatttcctgatgagggacatgaatcacttcatagagggaatgcgcacgt tcgcaacaaacacattcagtgatctgaaaacggataagaaaagttccgattgtcttgtggaactcctcatgacttattac acgctgttaagctggtatcacgcgcctggaaaatattttaccaaacccacaaaaaataattattgttttaaaaacgctgg atccatagttagggaaagtcagaacttccagttcaatgtgtcccattggtatgatgtactatctactgtcaacaacattg tggctacggcagactatttctcaaagtcacagaagatcgataaagaattctatagagatgacttactgggaaatcttgtt cacttgtcccaagtcctagaatacctacaaagtgcatatcacaacatagctagcgacttgaaaaagcaatgcaactctgt ggtgtatgttaagaacataagaaaaacgagcgaatttttacaagaatcgacttctaaactcaaagactatttgctcaaac aaaaaggaaccatgcaagaagtaagcaaatatttcctgatgagggacatgaatcacttcatagagggaatgcgcacgttc gcaacaaacacattcagtgatctgaaaacggataagaaaagttccgattgtcttgtggaactcctcatgacttattacac gctgttaagctggtatcacgcgcctggaaaatattttaccaaacccacaaaaaataattattgttttaaaaacgctggat ccatagttagggaaagtcagaacttccagttcaatgtgtcccattggtatgatgtactatctactgtcaacaacattgtg gctacggcagactatttctcaaagtcacagaagatcgataaagaattctataggtag |
|
Protein
| Protein ID | pfu_aug2.0_960.1_01279.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_960.1_01279.t1 MVFMMSINKKSVDMPKDEEKAICVNCDNPKIKGYHELSQEKNVRTSTLFQKFNDETTFHGVRYAFGNKRTCRQRIIWTVL IVCCLSILLLDVTERIQYFVSSPVTVNIVSKLNSSIVFPAVTICNQNAFRRTLALQNKHFRLISVLFEDQRYRRIKLSMK DFSMPFRELYTMNAHQKEDLILRCKWKGIPCSAENFTTVLTRYGQCYTFNGMGDDLKTIESPEEFQTKSSRMCKCHTPCY KKKYKPTMSYGSISDYSSNQLTSEEVSQITERYETSREAAFHFEEEFKSLLHNALQLDGKQLPAFYEMLEKFEFMDKNMI RCSSEVSMFDDVQLNYLISQLKGSHSVFRSYMWITQLIDRGPFGVSDDKVVEFFALLDNMLMEIEKTPKPQEKKAYFKMV LSTIQEKMDIASNLTYVKYYVNTLLGIYPNIWIKNLTEHMRDQREMILQNNLWRHFYKKDIKVKNDSLDTIISECYDLLK TYRKVVRTYRDKNVLNSAKLNETSQLLIMYAMKYAKDAEEFNTWYRDDLLGNLVHLSQVLEYLQSAYHNIASDLKKQCNS VVYVKNIRKTSEFLQESTSKLKDYLLKQKGTMQEVSKYFLMRDMNHFIEGMRTFATNTFSDLKTDKKSSDCLVELLMTYY TLLSWYHAPGKYFTKPTKNNYCFKNAGSIVRESQNFQFNVSHWYDVLSTVNNIVATADYFSKSQKIDKEFYRDDLLGNLV HLSQVLEYLQSAYHNIASDLKKQCNSVVYVKNIRKTSEFLQESTSKLKDYLLKQKGTMQEVSKYFLMRDMNHFIEGMRTF ATNTFSDLKTDKKSSDCLVELLMTYYTLLSWYHAPGKYFTKPTKNNYCFKNAGSIVRESQNFQFNVSHWYDVLSTVNNIV ATADYFSKSQKIDKEFYR |
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