Gene
| Gene Model ID | pfu_aug2.0_964.1_14687 |
|---|---|
| Locus | scaffold964.1 : 12514 ... 27195 : - |
| To GenomeBrowser | scaffold964.1:12514..27195 |
| Genes list of scaffold | scaffold964.1 |
| Synonym | pfu_aug1.0_19929.1_33055 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_964.1_14687.t1 | 2 | 1 | CLTH | 28 | 65 | 1.1e-26 | 93.2 | 0.38 | 570.0 | 0.1 |
| pfu_aug2.0_964.1_14687.t1 | 2 | 2 | CLTH | 111 | 233 | 1.1e-26 | 93.2 | 3.8e-29 | 5.6e-26 | 90.9 |
| pfu_aug2.0_964.1_14687.t1 | 1 | 1 | zf-RING_UBOX | 274 | 313 | 1.5e-18 | 66.2 | 2.1e-21 | 3.1e-18 | 65.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_964.1_14687.t1 | gi|602641758|ref|XP_007427677.1| | PREDICTED: protein RMD5 homolog A isoform X2 [Python bivittatus] | 0.0 |
| pfu_aug2.0_964.1_14687.t1 | gi|676482523|ref|XP_009062728.1| | hypothetical protein LOTGIDRAFT_207069 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_964.1_14687.t1 | gi|640791990|ref|XP_008051902.1| | PREDICTED: protein RMD5 homolog B isoform X2 [Tarsius syrichta] | 0.0 |
| pfu_aug2.0_964.1_14687.t1 | gi|327275317|ref|XP_003222420.1| | PREDICTED: protein RMD5 homolog A [Anolis carolinensis] | 0.0 |
| pfu_aug2.0_964.1_14687.t1 | gi|632948303|ref|XP_007889532.1| | PREDICTED: protein RMD5 homolog A-like isoform X2 [Callorhinchus milii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_964.1_14687.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_964.1_14687.t1 atggagtcgtgtgtagccgtggaaaaagagctagatcgtgtgatgtcgaagtttactggtcttaaagaccattcagacag aacccttgaagaactcataacttcttttcagaatgtacaaaaggagctgagcgaaggaaaatctgaggatggtctgacag caacacagtccctgattttgactcagatgttaaggcgtattaaagaggcagttaccagaatggggcaggaacacaaagat ttacacagctctgtgtccaaagttggaaaaactattgataggatcttacaattgtggagtgcaaaacagtatggtaaata ccagtacatgtacatttggtgtgagcagaacagacagaaactaaatgacattaacagttcattagagttcaaacttcacc gattaaagtttgttgatctgttaaagagaggtacatcacatcagctcgaggctcttcattattcacggaacttcgcacca tttgcacacagatacgctagagatgttcaggtgttgatgggcagcatgctttacttacgacaaggaatagaaaattcccc ctactctcatctcctaacacctatctactgggaggaaatttgtgatatattcaccagggatgcatgtacactcctgggca tgtcagtagaaagtccattaagtgtcagtataagagcaggttgccttgcccttccacctcttctcaacatcagacaagtt atgcagcaacgtcaagttacaggggtctggagcaataaagaggaattaccggtagagatagatctaggtcgtgagtacag gtatcattctatatttgcctgtcccattctacgtcagcagagtacagatattaatcctcccatgagattaatctgcggac atgttatttccagggacgcattaacaaaactttccaacggaaacaaagtgaaatgtccttattgtccaatagaacaactt ccctccgaggccaaacaggtgtttttctga |
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Protein
| Protein ID | pfu_aug2.0_964.1_14687.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_964.1_14687.t1 MESCVAVEKELDRVMSKFTGLKDHSDRTLEELITSFQNVQKELSEGKSEDGLTATQSLILTQMLRRIKEAVTRMGQEHKD LHSSVSKVGKTIDRILQLWSAKQYGKYQYMYIWCEQNRQKLNDINSSLEFKLHRLKFVDLLKRGTSHQLEALHYSRNFAP FAHRYARDVQVLMGSMLYLRQGIENSPYSHLLTPIYWEEICDIFTRDACTLLGMSVESPLSVSIRAGCLALPPLLNIRQV MQQRQVTGVWSNKEELPVEIDLGREYRYHSIFACPILRQQSTDINPPMRLICGHVISRDALTKLSNGNKVKCPYCPIEQL PSEAKQVFF |
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