Gene
| Gene Model ID | pfu_aug2.0_964.1_14689 |
|---|---|
| Locus | scaffold964.1 : 52937 ... 85325 : - |
| To GenomeBrowser | scaffold964.1:52937..85325 |
| Genes list of scaffold | scaffold964.1 |
| Synonym | pfu_aug1.0_6751.1_67534 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| u5 small nuclear ribonucleoprotein 200 kda helicase | GO:0003676 GO:0004386 GO:0005524 GO:0008152 GO:0019013 GO:0030529 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_964.1_14689.t1 | 3 | 1 | PhoH | 431 | 469 | 6.5e-07 | 28.7 | 0.0031 | 5.1 | 6.2 |
| pfu_aug2.0_964.1_14689.t1 | 3 | 1 | DEAD | 432 | 608 | 0.0 | 280.8 | 2.4e-32 | 4.0e-29 | 101.2 |
| pfu_aug2.0_964.1_14689.t1 | 3 | 1 | ResIII | 434 | 605 | 2.5e-30 | 105.7 | 1.1e-12 | 1.7e-09 | 37.7 |
| pfu_aug2.0_964.1_14689.t1 | 2 | 1 | Helicase_C | 731 | 808 | 2.8e-08 | 33.4 | 1.4e-10 | 2.3e-07 | 30.5 |
| pfu_aug2.0_964.1_14689.t1 | 2 | 1 | Sec63 | 930 | 1237 | 0.0 | 699.7 | 0.0 | 0.0 | 356.3 |
| pfu_aug2.0_964.1_14689.t1 | 3 | 2 | ResIII | 1280 | 1413 | 2.5e-30 | 105.7 | 8.1e-11 | 1.3e-07 | 31.6 |
| pfu_aug2.0_964.1_14689.t1 | 3 | 2 | DEAD | 1281 | 1416 | 0.0 | 280.8 | 1.7e-27 | 2.8e-24 | 85.5 |
| pfu_aug2.0_964.1_14689.t1 | 3 | 2 | PhoH | 1282 | 1334 | 6.5e-07 | 28.7 | 0.00045 | 0.75 | 8.9 |
| pfu_aug2.0_964.1_14689.t1 | 3 | 3 | ResIII | 1490 | 1624 | 2.5e-30 | 105.7 | 7.8e-11 | 1.3e-07 | 31.6 |
| pfu_aug2.0_964.1_14689.t1 | 3 | 3 | DEAD | 1491 | 1656 | 0.0 | 280.8 | 9.2e-29 | 1.5e-25 | 89.6 |
| pfu_aug2.0_964.1_14689.t1 | 3 | 3 | PhoH | 1492 | 1544 | 6.5e-07 | 28.7 | 0.00045 | 0.75 | 8.9 |
| pfu_aug2.0_964.1_14689.t1 | 2 | 2 | Helicase_C | 1819 | 1828 | 2.8e-08 | 33.4 | 2.4 | 4000.0 | -2.3 |
| pfu_aug2.0_964.1_14689.t1 | 2 | 2 | Sec63 | 1947 | 2259 | 0.0 | 699.7 | 0.0 | 0.0 | 347.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_964.1_14689.t1 | gi|632977950|ref|XP_007905632.1| | PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_964.1_14689.t1 | gi|634828904|ref|XP_007957626.1| | PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Orycteropus afer afer] | 0.0 |
| pfu_aug2.0_964.1_14689.t1 | gi|530565460|ref|XP_005279285.1| | PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Chrysemys picta bellii] | 0.0 |
| pfu_aug2.0_964.1_14689.t1 | gi|683939347|ref|XP_009098203.1| | PREDICTED: LOW QUALITY PROTEIN: U5 small nuclear ribonucleoprotein 200 kDa helicase [Serinus canaria] | 0.0 |
| pfu_aug2.0_964.1_14689.t1 | gi|564228335|ref|XP_006258619.1| | PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Alligator mississippiensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_964.1_14689.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_964.1_14689.t1 atgggagataaggcaaagaggagtaaacctccacagatggaggaaagaaaagtcaaacgtgttaaaagagatgaagtcca acacgacatgatgagaatgaaaggtacaactttactttctgagggaatagaagagcttgtcggtattctgtatcgtccca aaacccaggaaacacgtcaaacttacgaagttattcttagctttattcaagcagccttgggagatcagcctcgagatgta ctgtgtggagcagcggatgaagtactacaagtcctgaaaaatgacaagatgaaggataaggagaggaagaaggaagtgga gtctctgttaggtggactggctgaggaaaggtttgcactgctggtaaatctgggtaaaaagatcacagactggggacaag aagaaaagatgcaaactgatgataacatagatgagacctatggtgtcaacgtgcagtttgaggaatctgacgatgaagat gatgctgatgtgtatggagaagtcaaagatgaagtagaagatgaagacgcagaggaaggtgtggaagctgatattgacgt caccctgaagacaagtttggctggtggggaggatgggagtggcaagtcagacataggcctccaccccagggacatcgacg ccttctggctccagaggaagctcagtaaatactacccagaagatcccactatggcccagactaaggccggggaagtactg gatattctcaagagttcaggggatgatagagaggcagagaaccaacttgttatgctgcttggattttctacttttgactt catcaaagtgcttaggcagtacagacaaatgattctgtactgtacgatgctggctcaggcccagacccaggatgagagac aggggatagaggataaaatgtccagtgatgctgagctgtctggctacctcaaggcactggcctctactgataaggaagat atagtgtcaggggaggtggccaggaaacaacaggcaaggcagagtagggtagcagctgatctggaagctatggatgtaga tcataaacaagttctaggtcaagtgaacctgttagacttggatgacctgaccttcacacaaggcagtcacctgatggcca ataaaaagtgtcagctacctgatggatccttcagaaaacagaggaaaggttacgaggaagtccatgtgccagccttgaag ccaaaaccgtatgatgcaaacgagactccgctgaacattgacagacttcctaagtatgcccagcaagcgtttgatggttt tagctcactgaacagaatacagagccgtttattcaagagtgccatggaatctgatcagaatctcttactgtgtgccccta cgggagccggaaaaaccaatgtagctttactgtgcatgctgagggaaataggaaagcatataaatgcagatggaaccatt aacacagatgaattcaaaattatctacatagcccctatgagatccctggtacaggaaatggtcgggagcttttcagagag actgaaatcttacggcataaaagtagaggaactgacgggagatcatcagctgactaaagagcagataaatgctacccaga tcatcgtgtgtacgccagagaaatgggacataattacacggaaaggaggggagagaacctatacccagcttgtcaggctc atgatatttgatgagatccatttactacatgatgacagaggaccagttttagaggcacttgtagcaagaacaataaggaa catagagactacccaggaggatgtgagactggtaggtctcagtgccacgctcccgaactatgaggacgtagccacctttc tgagggtggatccagcggagggtctgtacttcttcgacaacagtttccgtcccgttcctctagagcagcagtttatcggt atcacagagaagaaagctgtcaaacgatttcagatcatgaatgacattgtatatgaaaaggttttggaacatgctggtaa aaatcaggtactggtatttgtacactcacgaaaggagactggtaaaacagcacgagctataagagatatgtgtctggaga aagactcccttggtatgttcctaaaggaagggtcagctaccacagagattctgagaacagaagctgagcaagtcaagaac ttagagctgaaagatctgttgccatatgggtttggaatacatcatgctggtatggcaaaagttgacaggatcttagtaga ggacttatttgccgatcggcacatccaggtgttggtgtccacgtctacgttggcctggggtgtcaacttgccggcacaca ccgttatcatcaaaggcacacagatatacagtcctgagaaaggaagatgggtggaactcagtgctcttgatgtcatgcag atgattggtcgagcaggacgtccccagtatgataccaaaggagagggtataatgctcactaaccacagtgaactacagta ctatctgtccttaatgaatcaacagcttcccatagagagccagtttatcagtaagctaacagatatgttgaatgctgagg tagtactaggaactgtacaaagtattaaggaagctatagattggcttggttacacctacctgtacatccgtatgttgaga tcaccatctctctatggtgtcggccatgatcaactgaaggatgaccctctcctacaacagttcaggaaagatctcatcca cacggcagccctgatgctggataaaaataacctcataaaatacgaccgcaaaactgggcagttccagagtaccgagcttg gacgtattgccagtcattactactgtactaatgagacgatatctacgtacaatcagctactgaagcccacacttagtgaa atagaactgttcagagttttctctctgtcgtctgaattcaaacatatatctgtacgtgaggaagagaagttagagctact gaagctgttagagagagtacctatacccatcaaagaaagtatagaggaacccagtgctaagaccaacgtcctgctccagg catacatatcacagttgaagctagagggctttgccctgatgtctgacatggtgtatgttacacagtctgctggaagactt atcagggccatatttgaaatagtacttcaccgagggtgggcacaactagcagacaaagccctagccctgtgtaaaatggt caacaagagaatgtggcagtccatgtgtccactcagacagttctacgataaaaagatgccgattgaagtcatcaaaaaga tagaaaagaaaaactttccgtttgagagactatatgaccttgaccctctggagatcggagaatttatacgagttcctaag agtggcaaagtcatccataagtacgtccatttgtttcccaagctggagttgtctgtccatgtcctgccgatcacccgagc aacattacgagtcgaactgacaatcacaccagatttccagtgggatgagaaagtacatggatcgtctgaggcattttgga taatggtagaggatgttgacagtgaggtcattctgcatcatgagtactttctactgaaaagcaaatttgcgacggatgaa cacaatgtgaagttctttgtacctgtgtttgaaccacttcctcctcagtactttatcagagtcatctctgacagatggat tgctgccgagactcagttacctgtatcattccgccacttgatcctcccagaaaaataccccccacccactgagctgttgg atctacaacccctgcctgtatctgccctcaggaatccaggatttgaatctctgtacagtgaaaaattcccattctttaac cccatccagacacaagtgttcaatgcagtgtataacacagatgacaatgtgtttattggggctccgacagggagcggtaa aaccatctgtggagagtttgccatactaagaatgttctcacagaatcccgagggtagatgtgtgtacgtgactccattag aagcccttgcacaacagatgttcaatgagtggcacggtaaatttgctaccaagatggggaagaaggttgtcttgttaaca ggagagacgggtacagaccttaaactcctagctaaaggtaacattatcatcagtacaccagagaaatgggatgtcttgtc tagacgatggaagcagaggaaaaatgtacaaaacgtaaatctatttatagtggacgaactgcacttgattggacaggagg ctgggctcacctcgacgaagttgagtgagcttatgctatacccccacgcgtccgtgtccgcatccgcgtccgctgctgag actcagttacctgtatcattccgccacttgatcctcccagaaaaataccccccacccaccgaactgttagatctacaacc cctgcctgtatctgccctcaggaatccaggatttgaatctctgtacagtgaaaaattcccattcttcaaccccatccaga cacaagtgttcaatgcggtgtataacacagatgacaatgtgtttattggggctccaacagggagcggtaaaaccatctgt ggagagtttgccatactaagaatgttctcacagaatccagagggtagatgtgtgtacgtgactccattagaagcccttgc acaacagatgttcaatgagtggcacggtaaatttgctaccaagatgggaaagaaggttgtcttgttaacaggagagacgg gtacagaccttaaactcctagctaaaggtaatattatcatcagtacaccggagaaatgggacgtactgtctagacgatgg aagcagaggaaaaatgtacaaaacgtaaatctatttatagtggacgaactgcacctgattggacaggaggctgggcctgt cctggaggtgatctgttctcgtatgaggtacatcagttctcaactggagagaaacatccgtattgtatcgttaagctcgt cagtgtcaaatgccaaggacatatcacagtggctgggatgtagtaccgctggattcttcaatttccatccaaatgttcga ccaatacctttggaacttcacattcaaggcttcaacatcagtcacaacatgtccagaatcattgccatggctaagccaac ttaccaggccattttacggcactctccccgtaagcctgttattgtgtttgtgccgtccaggaagcagactcgtttaacgg ccatagacattctaacgtttagtgctgcagagatacagccagacagtgacgtaccccgaagcaggtttcttcacgtcaag gaggaggacatacaaccattccttgataaaatcaccgacaagaccctgaaggagaccttgagtaatggagtgggatatct tcacgagggattgagtgatatagagaagaaagccgtagagaacttgtttgccagcggggccgtacaagtatatgaagatt atcccataccagatgtgttacagatgattggcagggctaatcgaccaatggatgacgacgaaggaaaagcagttatcctt tgtcagagttcaaagaaggagtttttcaagaaattcttgtatgaacctttaccagtagagagtcacttggaccactgtct ccatgaccactttaacgcggagattgtgacacgtacgatagagaacaagcaggatgccgtagattaccttacgtggacgt ttatataccgacgtatgacccagaaccccaactattacaacctacagggtgtgtcacacagacatctctcagatcatatg tctgagttggtggagaacaccatcagtgatcttgaacagtctaagtgtatcagtgtagaggatgagatggacgtaacacc actcaatctgggaatgattgcagcttactattacatcaactacacaactatagaaaccttcagtctgtcactgaataaca agaccaaggtaaagggtttactggagatcatatcatatgcagcagagtacgaggatattcccatacgacatcacgaggac tccatcctcaaaacactcgctagccgtttgccaaataaattgaacagtcagaagtacaatgatccacatgtgaagacaaa tctgctgttacaagctcatctatccaggatgcagctgtcggcagaactacagtctgatacggaggaaatactcggcaagg ctgttaggcttatccaagcttgtgtggacgtattgagtagtaatggttggctatccccagccctggctgccatggagctc gcacagatggtcactcaagccatgtggggcaaggattcatacctcaaacaattgccacacttcacagccgatatcgtcaa acgatgccaagaaaagaaggtagagagtatatttgacgtaatggagatggaggacgatgacagaaacagtctactacagc tgtccgaggctcagatggccgacatcgctaggttctgtaataaataccccaacatagaaatgtccttcaacgtccaagaa aaagacagtctgcatagtggttcaccagttaatgtgatggtcactttggagagagaagatgaacttgtagggccagttat tgctcctttcttccctcagaaaagagaggagggttggtgggtagtgattggagacaccaagtcaaattctctcctgtcaa tcaaacgtttgaccctgcagcagaaggccaaggtcaaactagactttgtggcgccctctcctggccattacaattacact atattctttatgagtgacgcgtacatgggctgtgaccaggagtataagttcagtattgacgttaaggagggcgatagcgg tagtgaagacagcgggtcagagtcagattaa |
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Protein
| Protein ID | pfu_aug2.0_964.1_14689.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_964.1_14689.t1 MGDKAKRSKPPQMEERKVKRVKRDEVQHDMMRMKGTTLLSEGIEELVGILYRPKTQETRQTYEVILSFIQAALGDQPRDV LCGAADEVLQVLKNDKMKDKERKKEVESLLGGLAEERFALLVNLGKKITDWGQEEKMQTDDNIDETYGVNVQFEESDDED DADVYGEVKDEVEDEDAEEGVEADIDVTLKTSLAGGEDGSGKSDIGLHPRDIDAFWLQRKLSKYYPEDPTMAQTKAGEVL DILKSSGDDREAENQLVMLLGFSTFDFIKVLRQYRQMILYCTMLAQAQTQDERQGIEDKMSSDAELSGYLKALASTDKED IVSGEVARKQQARQSRVAADLEAMDVDHKQVLGQVNLLDLDDLTFTQGSHLMANKKCQLPDGSFRKQRKGYEEVHVPALK PKPYDANETPLNIDRLPKYAQQAFDGFSSLNRIQSRLFKSAMESDQNLLLCAPTGAGKTNVALLCMLREIGKHINADGTI NTDEFKIIYIAPMRSLVQEMVGSFSERLKSYGIKVEELTGDHQLTKEQINATQIIVCTPEKWDIITRKGGERTYTQLVRL MIFDEIHLLHDDRGPVLEALVARTIRNIETTQEDVRLVGLSATLPNYEDVATFLRVDPAEGLYFFDNSFRPVPLEQQFIG ITEKKAVKRFQIMNDIVYEKVLEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDSLGMFLKEGSATTEILRTEAEQVKN LELKDLLPYGFGIHHAGMAKVDRILVEDLFADRHIQVLVSTSTLAWGVNLPAHTVIIKGTQIYSPEKGRWVELSALDVMQ MIGRAGRPQYDTKGEGIMLTNHSELQYYLSLMNQQLPIESQFISKLTDMLNAEVVLGTVQSIKEAIDWLGYTYLYIRMLR SPSLYGVGHDQLKDDPLLQQFRKDLIHTAALMLDKNNLIKYDRKTGQFQSTELGRIASHYYCTNETISTYNQLLKPTLSE IELFRVFSLSSEFKHISVREEEKLELLKLLERVPIPIKESIEEPSAKTNVLLQAYISQLKLEGFALMSDMVYVTQSAGRL IRAIFEIVLHRGWAQLADKALALCKMVNKRMWQSMCPLRQFYDKKMPIEVIKKIEKKNFPFERLYDLDPLEIGEFIRVPK SGKVIHKYVHLFPKLELSVHVLPITRATLRVELTITPDFQWDEKVHGSSEAFWIMVEDVDSEVILHHEYFLLKSKFATDE HNVKFFVPVFEPLPPQYFIRVISDRWIAAETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNPGFESLYSEKFPFFN PIQTQVFNAVYNTDDNVFIGAPTGSGKTICGEFAILRMFSQNPEGRCVYVTPLEALAQQMFNEWHGKFATKMGKKVVLLT GETGTDLKLLAKGNIIISTPEKWDVLSRRWKQRKNVQNVNLFIVDELHLIGQEAGLTSTKLSELMLYPHASVSASASAAE TQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNPGFESLYSEKFPFFNPIQTQVFNAVYNTDDNVFIGAPTGSGKTIC GEFAILRMFSQNPEGRCVYVTPLEALAQQMFNEWHGKFATKMGKKVVLLTGETGTDLKLLAKGNIIISTPEKWDVLSRRW KQRKNVQNVNLFIVDELHLIGQEAGPVLEVICSRMRYISSQLERNIRIVSLSSSVSNAKDISQWLGCSTAGFFNFHPNVR PIPLELHIQGFNISHNMSRIIAMAKPTYQAILRHSPRKPVIVFVPSRKQTRLTAIDILTFSAAEIQPDSDVPRSRFLHVK EEDIQPFLDKITDKTLKETLSNGVGYLHEGLSDIEKKAVENLFASGAVQVYEDYPIPDVLQMIGRANRPMDDDEGKAVIL CQSSKKEFFKKFLYEPLPVESHLDHCLHDHFNAEIVTRTIENKQDAVDYLTWTFIYRRMTQNPNYYNLQGVSHRHLSDHM SELVENTISDLEQSKCISVEDEMDVTPLNLGMIAAYYYINYTTIETFSLSLNNKTKVKGLLEIISYAAEYEDIPIRHHED SILKTLASRLPNKLNSQKYNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILGKAVRLIQACVDVLSSNGWLSPALAAMEL AQMVTQAMWGKDSYLKQLPHFTADIVKRCQEKKVESIFDVMEMEDDDRNSLLQLSEAQMADIARFCNKYPNIEMSFNVQE KDSLHSGSPVNVMVTLEREDELVGPVIAPFFPQKREEGWWVVIGDTKSNSLLSIKRLTLQQKAKVKLDFVAPSPGHYNYT IFFMSDAYMGCDQEYKFSIDVKEGDSGSEDSGSESD |
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