Gene
| Gene Model ID | pfu_aug2.0_964.1_14690 |
|---|---|
| Locus | scaffold964.1 : 147656 ... 161521 : + |
| To GenomeBrowser | scaffold964.1:147656..161521 |
| Genes list of scaffold | scaffold964.1 |
| Synonym | pfu_aug1.0_322.1_14973 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| matrix metalloproteinase-21 | GO:0008237 GO:0046872 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_964.1_14690.t1 | 1 | 1 | PG_binding_1 | 95 | 127 | 5.4e-08 | 32.6 | 1.3e-10 | 1.9e-07 | 30.9 |
| pfu_aug2.0_964.1_14690.t1 | 1 | 1 | Peptidase_M10 | 257 | 419 | 5.4e-33 | 113.9 | 7.5e-36 | 1.1e-32 | 112.8 |
| pfu_aug2.0_964.1_14690.t1 | 4 | 1 | Hemopexin | 444 | 478 | 5.0e-17 | 61.3 | 0.00016 | 0.23 | 11.2 |
| pfu_aug2.0_964.1_14690.t1 | 4 | 2 | Hemopexin | 497 | 529 | 5.0e-17 | 61.3 | 6.9e-09 | 1.0e-05 | 25.1 |
| pfu_aug2.0_964.1_14690.t1 | 4 | 3 | Hemopexin | 543 | 574 | 5.0e-17 | 61.3 | 6.7e-07 | 0.00099 | 18.7 |
| pfu_aug2.0_964.1_14690.t1 | 4 | 4 | Hemopexin | 601 | 622 | 5.0e-17 | 61.3 | 0.00024 | 0.36 | 10.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_964.1_14690.t1 | gi|676468805|ref|XP_009058327.1| | hypothetical protein LOTGIDRAFT_122269 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_964.1_14690.t1 | gi|657559730|ref|XP_008283722.1| | PREDICTED: matrix metalloproteinase-21 [Stegastes partitus] | 0.0 |
| pfu_aug2.0_964.1_14690.t1 | gi|657753627|ref|XP_008312321.1| | PREDICTED: matrix metalloproteinase-21 isoform X2 [Cynoglossus semilaevis] | 0.0 |
| pfu_aug2.0_964.1_14690.t1 | gi|657753625|ref|XP_008312320.1| | PREDICTED: matrix metalloproteinase-21 isoform X1 [Cynoglossus semilaevis] | 0.0 |
| pfu_aug2.0_964.1_14690.t1 | gi|512828348|ref|XP_002932698.2| | PREDICTED: matrix metalloproteinase-21 [Xenopus (Silurana) tropicalis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_964.1_14690.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_964.1_14690.t1 atggcaaactgttcccagtggatatttgcggtactgcagattgttttattggttggagcagaaaagtttttccagtaccg tgatcatagagaccaatccaagtatttacgtccaagacagatggaaatagtacatagcagcgaagaagcaacagtccaat tagaaaaatatggttaccttcgctgcaagtcaaaacgaaaaagacggtcacctatgggctttggtatatctgagggaatc caccccacggaagatagagaagtagacgaggaccttccgtattgtaaccaaaaacaagtagaaaatgcaatcaaagaata tcaaaagaggtacaaattacctgagaccggtattttagacgaagtgactagaaaatttatgagcacgtctagatgtggaa acaaagacaaggaggaaacggaagttaaagaagacgttaaaacatcagattctgaaaaggtcggtgcaatgatagcacac gatccggattttagaaaaatttcaaatcatttcaaaaataaaaatagaccttggaaaagatcagcaaaagtgactacatt aatgagagtactaaccgaacaaagtagaacagatccattaaataatcaaagaagaaaatatttaaaagaattcgtggaaa atataaaaaataatagtgactatcttcttcaaccatatacagaagaggaaagacgaaaacgttctattaaagttcatctc aatatgacatctggaaatggtgaaaaaatttgggatggacaaaaatttaccaaacattatattcgatggagattacttaa aacaggatttagtaccagaattccggtagaagaacaaagaagtagtttaaatctagcttttcgaatgtggagtgaagtgg ttccattgaagtttgaggaggatgcatcgggggacattcaaagtgtagacatagaaatagcttttggaagaggttctcat cagaattgtggtaggaagttcgatgggcatggaggagaaatagctcactcttggagtggtagaaatgttcacttcgatga cgaagaggattacaaatctatagagaccatcacaaatgaaaaggatgggatctatttactacgggtagcagtacacgaga taggtcatgtcctcggattggctcatacggacaaagggtattccattatgtacgcaatttatcatgagaacatcaaccct ggaaaagagtttgagcttggctgggaggacagaaaagaggttcagaaactctatggtacttgtcgaggcacatttaatac cctatttgactgggtaagaaagcgccctgacaacaaattcatcttcaacacatacatgtttcgtaacaatcactactgga tgtatgaaaaccatgccaacaggacccgctatggagaccctctatatattgccagagaatgggagggtgttccaaaccac gtggatgggtacttacatgtttggtatttcgctggcaagcacgtagccgacgaagctttcttcttcaaaggtgacaaata ctacaaatatgacagtgacactgacaaggtgtacccgggatggcctcgcctcatcaaggaagactttggacccaaacctg gccagacagagggcatcccagataatattgatacagttctcttcgacatgagggacagaaatatatatttcttcaaagac gatatggtgtacgtctttgatcctaagcttcctcctgaaacaaggggctgttgcgaaaggaagcgtaaaatctgggagga atttccagcacttgatggggaggatccattgcctggtagtattgatgccgcttattactcatacaatgagagttctgttt attttttgaaaggagaacatgtttggcagaacgttctatttcatccgaggcaaaaacagattcggaacggtgtgaagtat ctaggacattggtacaataagtggtttgatatatgtgacgttaggaatatggattcacctcctccccctgtggtacagaa tgataaaccggaaacaactataagcccaatcgtcagacggtga |
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Protein
| Protein ID | pfu_aug2.0_964.1_14690.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_964.1_14690.t1 MANCSQWIFAVLQIVLLVGAEKFFQYRDHRDQSKYLRPRQMEIVHSSEEATVQLEKYGYLRCKSKRKRRSPMGFGISEGI HPTEDREVDEDLPYCNQKQVENAIKEYQKRYKLPETGILDEVTRKFMSTSRCGNKDKEETEVKEDVKTSDSEKVGAMIAH DPDFRKISNHFKNKNRPWKRSAKVTTLMRVLTEQSRTDPLNNQRRKYLKEFVENIKNNSDYLLQPYTEEERRKRSIKVHL NMTSGNGEKIWDGQKFTKHYIRWRLLKTGFSTRIPVEEQRSSLNLAFRMWSEVVPLKFEEDASGDIQSVDIEIAFGRGSH QNCGRKFDGHGGEIAHSWSGRNVHFDDEEDYKSIETITNEKDGIYLLRVAVHEIGHVLGLAHTDKGYSIMYAIYHENINP GKEFELGWEDRKEVQKLYGTCRGTFNTLFDWVRKRPDNKFIFNTYMFRNNHYWMYENHANRTRYGDPLYIAREWEGVPNH VDGYLHVWYFAGKHVADEAFFFKGDKYYKYDSDTDKVYPGWPRLIKEDFGPKPGQTEGIPDNIDTVLFDMRDRNIYFFKD DMVYVFDPKLPPETRGCCERKRKIWEEFPALDGEDPLPGSIDAAYYSYNESSVYFLKGEHVWQNVLFHPRQKQIRNGVKY LGHWYNKWFDICDVRNMDSPPPPVVQNDKPETTISPIVRR |
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