Gene
| Gene Model ID | pfu_aug2.0_970.1_01286 |
|---|---|
| Locus | scaffold970.1 : 83526 ... 98224 : + |
| To GenomeBrowser | scaffold970.1:83526..98224 |
| Genes list of scaffold | scaffold970.1 |
| Synonym | pfu_aug1.0_938.1_58308 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| mediator of rna polymerase ii transcription subunit 16 | GO:0009987 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_970.1_01286.t1 | 3 | 1 | WD40 | 76 | 102 | 1.1e-06 | 28.2 | 4.8e-06 | 0.035 | 13.9 |
| pfu_aug2.0_970.1_01286.t1 | 3 | 2 | WD40 | 113 | 133 | 1.1e-06 | 28.2 | 0.58 | 4300.0 | -2.2 |
| pfu_aug2.0_970.1_01286.t1 | 1 | 1 | Med16 | 121 | 829 | 0.0 | 248.7 | 0.0 | 0.0 | 248.1 |
| pfu_aug2.0_970.1_01286.t1 | 3 | 3 | WD40 | 362 | 380 | 1.1e-06 | 28.2 | 4.6e-05 | 0.34 | 10.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_970.1_01286.t1 | gi|676460214|ref|XP_009055550.1| | hypothetical protein LOTGIDRAFT_209457 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_970.1_01286.t1 | gi|524899176|ref|XP_005106027.1| | PREDICTED: mediator of RNA polymerase II transcription subunit 16-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_970.1_01286.t1 | gi|632979465|ref|XP_007906485.1| | PREDICTED: mediator of RNA polymerase II transcription subunit 16 [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_970.1_01286.t1 | gi|543376081|ref|XP_005531249.1| | PREDICTED: mediator of RNA polymerase II transcription subunit 16 [Pseudopodoces humilis] | 0.0 |
| pfu_aug2.0_970.1_01286.t1 | gi|727063819|ref|XP_010409927.1| | PREDICTED: mediator of RNA polymerase II transcription subunit 16, partial [Corvus cornix cornix] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_970.1_01286.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_970.1_01286.t1 atggaaacagtttattttaccgaatttcagacagtaaattcagaaaaagactggatttcagaagacaagtgttgttgttc gttgtcatcacaaaatatccttgctgtcagccggcagtatgctcaagtgaaaaagaagagcgtaggagagttgagtgtac agtatgaggtcggcctgtttgaccttgacagaccttgggaatggtaccaggtcatggtcagttctagtgttatcacgtgt ctggagtgggacaagatgggaaatcgtctactgatagctgatgctgacggaaaatgtcagatatggcaaatgcaggactt tctgctgaacagatggacatgtcatagctcgtcaacattagaggatgaagaaattttggctgtagcttggttccataatg gtgtacaggtcacttttaatccagagaaatgtggaacaattctatacaatgacaagttccaaaggggccagtttgtgcca tctctcacaaaatttggtggtaagccagttgatggttggattgctgttacagctagtgggctggtatgtgccggcgtagt aagcacccaggagccgtacatagaagtggccaatcagacgctgtcacagtcctatcaacggctaagtctggtgtcaatcg ctcatactggtaaaggggagatggtggtagccgctagtgatggtcaaatctccacggcgattcattgttacaaagtgtca ctcagcttgcagaatggtgtattacagataagttgtaagccatcagcaagtttcttcgccaaaagtcaggtggactatgc agcaaatgacagtcaacgtatggggataactcagctttacttcctaaaccaggagagtagcgagactgtgctggtcagct gtggtagccatggttacagctctctggagatctggcagctccttgaccataacatgccggtcaatagtaaattatgtcag tatggccaggtgccggacactgtatatcacatgccaaaatggatgcataaggcaaccattcaacactcatcatacctgac atccatagcaacccccagacttcctctgaccaagaccatgacagattctggattctccccatacatagcgacagcgtaca gagacggaactttgaagctgatccatcgtcacacctatcaagttatgcagtctggggtcatggatacgttttataatcct aatgttggtgcaagtcccacaaagaaaccaaggaaatctgtcaacatatcaaacctcatccaaaccatgagtggctgtgg tttggtagcagtgcatgatgggaaaatttcagttttgaaagtgtttaatgtaaaggatggtggaatgatgatgtcagcat cgtatgtttgcttgttactggagtacatacttgttgctggtcaagactggtgggatattttgctcgctgtcaaaccagga aatattgaaagtatatgtatgaagttactggacaatttctacaaacagccggcccccatgcaagacttaattcttatgcg actttcagctttgagagttgccatgtacagtatgagcacatcaactcaccagaaagccgcagactatcatacaagacttg tgttacaggccattcactcagtattcagagcacttctcagaccaaaggctgtcaccacacaagataagagtccagcagag aaagtgacaatgttatgtcagaagtctacagacggtgatctggagaatctgttggtcaatctggaggtagaggaattcct catagaccccaggaggaaagacaagaaaggctcgggggaagcccttcagtccctccagccactgatacaatgggtagcag atttttcactccatctcctggcatccatacctctctaccagtcctactcaaccttccctggagcctcacttctcagcaac tcatcggttctcaacacactgcgagaacttctcgtcatcatcaggatctggggcgtcattagtcctgcttccttaccggt atttgcaactacatcaaacgtggactgtctagctcacctgtttaaggtgatgactaaagcttggctatgctccagtaaca aggaggggaataaactagaatatgatgaagcattgttagatgagtgctgtgtactgccgagcaaggttctagttccgtct gtgagtcaggacttccgattaaacagtactggctactcagtatttacccagcatacaccagtttcatttgtgttcagaga gcagcctgaatatctgtaccatcggaagaaaagtaagatgcattatgtgtcagatgtattaatagaaaacggacagcatc atgatattgtacgacagatccacctaggggcacagctgaaggagggggttaggcagtgtgtaaggtgtggggggttttcc ctccttcagactgtagcctcctcccccatcattaaggcctgggaacaccgctggcagaaacactgtctatgcggtgctca ctggaaactctatactcaacaatcttga |
|
Protein
| Protein ID | pfu_aug2.0_970.1_01286.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_970.1_01286.t1 METVYFTEFQTVNSEKDWISEDKCCCSLSSQNILAVSRQYAQVKKKSVGELSVQYEVGLFDLDRPWEWYQVMVSSSVITC LEWDKMGNRLLIADADGKCQIWQMQDFLLNRWTCHSSSTLEDEEILAVAWFHNGVQVTFNPEKCGTILYNDKFQRGQFVP SLTKFGGKPVDGWIAVTASGLVCAGVVSTQEPYIEVANQTLSQSYQRLSLVSIAHTGKGEMVVAASDGQISTAIHCYKVS LSLQNGVLQISCKPSASFFAKSQVDYAANDSQRMGITQLYFLNQESSETVLVSCGSHGYSSLEIWQLLDHNMPVNSKLCQ YGQVPDTVYHMPKWMHKATIQHSSYLTSIATPRLPLTKTMTDSGFSPYIATAYRDGTLKLIHRHTYQVMQSGVMDTFYNP NVGASPTKKPRKSVNISNLIQTMSGCGLVAVHDGKISVLKVFNVKDGGMMMSASYVCLLLEYILVAGQDWWDILLAVKPG NIESICMKLLDNFYKQPAPMQDLILMRLSALRVAMYSMSTSTHQKAADYHTRLVLQAIHSVFRALLRPKAVTTQDKSPAE KVTMLCQKSTDGDLENLLVNLEVEEFLIDPRRKDKKGSGEALQSLQPLIQWVADFSLHLLASIPLYQSYSTFPGASLLSN SSVLNTLRELLVIIRIWGVISPASLPVFATTSNVDCLAHLFKVMTKAWLCSSNKEGNKLEYDEALLDECCVLPSKVLVPS VSQDFRLNSTGYSVFTQHTPVSFVFREQPEYLYHRKKSKMHYVSDVLIENGQHHDIVRQIHLGAQLKEGVRQCVRCGGFS LLQTVASSPIIKAWEHRWQKHCLCGAHWKLYTQQS |
|