Gene
| Gene Model ID | pfu_aug2.0_972.1_08049 |
|---|---|
| Locus | scaffold972.1 : 27206 ... 62542 : + |
| To GenomeBrowser | scaffold972.1:27206..62542 |
| Genes list of scaffold | scaffold972.1 |
| Synonym | pfu_aug1.0_42592.1_63114 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| glycine receptor subunit alpha-4-like isoform x2 | GO:0005216 GO:0006810 GO:0016020 GO:0044699 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_972.1_08049.t1 | 3 | 1 | Neur_chan_LBD | 14 | 175 | 0.0 | 243.9 | 7.69999e-40 | 1.3e-36 | 125.8 |
| pfu_aug2.0_972.1_08049.t1 | 3 | 1 | Neur_chan_memb | 182 | 274 | 0.0 | 223.5 | 1.4e-30 | 2.3e-27 | 96.4 |
| pfu_aug2.0_972.1_08049.t1 | 3 | 2 | Neur_chan_LBD | 315 | 332 | 0.0 | 243.9 | 0.15 | 250.0 | 0.6 |
| pfu_aug2.0_972.1_08049.t1 | 3 | 3 | Neur_chan_LBD | 381 | 543 | 0.0 | 243.9 | 3.0e-37 | 4.9e-34 | 117.3 |
| pfu_aug2.0_972.1_08049.t1 | 3 | 2 | Neur_chan_memb | 552 | 641 | 0.0 | 223.5 | 8.0e-33 | 1.3e-29 | 103.7 |
| pfu_aug2.0_972.1_08049.t1 | 3 | 3 | Neur_chan_memb | 641 | 718 | 0.0 | 223.5 | 2.6e-09 | 4.3e-06 | 26.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_972.1_08049.t1 | gi|542172699|ref|XP_005467438.1| | PREDICTED: glycine receptor subunit alpha-4-like isoform X2 [Oreochromis niloticus] | 0.0 |
| pfu_aug2.0_972.1_08049.t1 | gi|658871720|ref|XP_008418802.1| | PREDICTED: glycine receptor subunit alpha-4-like isoform X2 [Poecilia reticulata] | 0.0 |
| pfu_aug2.0_972.1_08049.t1 | gi|617460947|ref|XP_007571976.1| | PREDICTED: glycine receptor subunit alpha-4-like isoform X1 [Poecilia formosa] | 0.0 |
| pfu_aug2.0_972.1_08049.t1 | gi|548340755|ref|XP_005722935.1| | PREDICTED: glycine receptor subunit alpha-4-like isoform X1 [Pundamilia nyererei] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_972.1_08049.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_972.1_08049.t1 atgagcttctttgaagttagcccaaaagccttcattcaaacatttctggacattttgtttgctggatacgatggcagagt tgctccaaatttcatgcaagattacccagttctcaccgaagttggtatttacatagtgagcatcgattccataagtgact ctagtatgggtttcacaatgagtttctttctccgacaacgttggaaggatccccgcctgaagtatacctttgagagttcc tcgccttatttgttcctggattcagattctatacaaaaagtatggcgtccggatttatatatactgaacgagaaaagcgc taaaaatcacgaaatcacagtaccaaatatggcaatgtacatatatagagacggttcaatattttttagtcacagggtaa ccggagaattttcatgttttttgaacctgagaaaatatcctttggatcggcaaaagtgtcatattatgtttgaaagctat aattatacttgcatcggtgcagatttccatcttacgcgcaaccaaggatattattttgttcaaatttatattccaacgag cctgattgtcatgttgtcatggtccaatttctggttgaacgtggatgccattcctgctcgaatttcattgggtcttttga cagtgctcaccatggcaacgtcaagtgcatcggctggtgcaaacctaccacgtgtttcatatatcaaagccatggatgtg tggattttcgtttgcatgttttttgtttttgctgccttcttggagtacgcatgggtcaacgtatctctaagggttgaaca acgaaggaaatctgtggtaaaacaagacaaagaaagcgagaacgataaaaagaaagtcaagaacaatatatactctttgg agattgataataagctgggatttatctatcggacgaaaggtttcaacgaaaccatctccagtcagtcgattcttcagaaa ttgtttgacggatacgatggacgggtgccaccaaacttcatgcaagtttacatcattatccattcgctactgtttgacaa acgttacagatcgtttggcaagaaacttattatcaaagctttgttgagcaaatatgactttagttatttgctcatttggg acgactccggcttcaggggctatacaatgagtttctttcttcgacaaagatggaaagatgctcgtctacagtacacgtcc aatagcacctctccatatctgtctcttgactctcagtctattgccaagatctggaggccagacctgtacattatgaacga aaaagatgctagaaaacattacatcacagtgcctaacgagctgatgtatctatacagagatggttctatattgtacagtc acagagttaccggtgaattttcctgcttcttgaatcttagaaaatttcccttagatcgacaaatatgtagtttgaaattc gaaagttatggtaatacagcaagagaactggttttacggtggcacagctctcccgtggggatgtcaaacgatgtcgcgct accacaatttgacctggatgaaaacaacaagtttaaaacatttatatgtgataacatatactttaatgaaaattacacat gtattggagtagatattcatctttggaggaatcagggacattactttatccagatttatatcccaacgggcctcattgtc atgctgtcttggtctaatttctggttaaacgtagacgcggtgcctgctcgaatttcattgggtctcctgaccgtcctcac catgacaacatcaagtgcctccaccggaaacaatctaccaaaggtgtcttatgtcaaggccttggatgtttggatctttg tgtgcctattttttgttttcgccgcatttttggaatacgcttgggtaaatgtctctctcagggtggagcaacgacggaaa agtaacgaaaccattaagaaagagaaagaagacgagacgaaaaaagtgaaggatgagcactattcccaggagttctacag aacatctcttagtacagtagcgggaccattagcttcagccattcgtgcaaagaacaattatttaaatagcaacagagaaa aagctcggaacattgacagagttgcacgagttgtctttcctgtgtcatttcttttgtttaacattggatattggatcttc tacatattatgggaaccagtcaagcagagatcatttgattaa |
|
Protein
| Protein ID | pfu_aug2.0_972.1_08049.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_972.1_08049.t1 MSFFEVSPKAFIQTFLDILFAGYDGRVAPNFMQDYPVLTEVGIYIVSIDSISDSSMGFTMSFFLRQRWKDPRLKYTFESS SPYLFLDSDSIQKVWRPDLYILNEKSAKNHEITVPNMAMYIYRDGSIFFSHRVTGEFSCFLNLRKYPLDRQKCHIMFESY NYTCIGADFHLTRNQGYYFVQIYIPTSLIVMLSWSNFWLNVDAIPARISLGLLTVLTMATSSASAGANLPRVSYIKAMDV WIFVCMFFVFAAFLEYAWVNVSLRVEQRRKSVVKQDKESENDKKKVKNNIYSLEIDNKLGFIYRTKGFNETISSQSILQK LFDGYDGRVPPNFMQVYIIIHSLLFDKRYRSFGKKLIIKALLSKYDFSYLLIWDDSGFRGYTMSFFLRQRWKDARLQYTS NSTSPYLSLDSQSIAKIWRPDLYIMNEKDARKHYITVPNELMYLYRDGSILYSHRVTGEFSCFLNLRKFPLDRQICSLKF ESYGNTARELVLRWHSSPVGMSNDVALPQFDLDENNKFKTFICDNIYFNENYTCIGVDIHLWRNQGHYFIQIYIPTGLIV MLSWSNFWLNVDAVPARISLGLLTVLTMTTSSASTGNNLPKVSYVKALDVWIFVCLFFVFAAFLEYAWVNVSLRVEQRRK SNETIKKEKEDETKKVKDEHYSQEFYRTSLSTVAGPLASAIRAKNNYLNSNREKARNIDRVARVVFPVSFLLFNIGYWIF YILWEPVKQRSFD |
|