Gene
| Gene Model ID | pfu_aug2.0_972.1_08050 |
|---|---|
| Locus | scaffold972.1 : 65686 ... 71344 : + |
| To GenomeBrowser | scaffold972.1:65686..71344 |
| Genes list of scaffold | scaffold972.1 |
| Synonym | pfu_aug1.0_3449.1_08621 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| glycine receptor subunit alpha-4 | GO:0006810 GO:0016020 GO:0044699 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_972.1_08050.t1 | 1 | 1 | Neur_chan_LBD | 33 | 148 | 3.7e-20 | 71.9 | 6.8e-24 | 5.1e-20 | 71.5 |
| pfu_aug2.0_972.1_08050.t1 | 1 | 1 | Neur_chan_memb | 171 | 253 | 6.4e-22 | 78.5 | 1.3e-25 | 9.4e-22 | 78.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_972.1_08050.t1 | gi|504150536|ref|XP_004587661.1| | PREDICTED: glycine receptor subunit alpha-1 [Ochotona princeps] | 0.0 |
| pfu_aug2.0_972.1_08050.t1 | gi|544522147|ref|XP_005594298.1| | PREDICTED: glycine receptor subunit alpha-4 isoform X2 [Macaca fascicularis] | 2.00386e-43 |
| pfu_aug2.0_972.1_08050.t1 | gi|699684488|ref|XP_009887612.1| | PREDICTED: glycine receptor subunit alpha-4 [Charadrius vociferus] | 3.99931e-42 |
| pfu_aug2.0_972.1_08050.t1 | gi|260836168|ref|XP_002613078.1| | hypothetical protein BRAFLDRAFT_89960 [Branchiostoma floridae] | 2.0e-39 |
| pfu_aug2.0_972.1_08050.t1 | gi|514781589|ref|XP_005027888.1| | PREDICTED: glycine receptor subunit alpha-4 [Anas platyrhynchos] | 9.0e-39 |
Transcript
| Transcript ID | pfu_aug2.0_972.1_08050.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_972.1_08050.t1 atggagaaaatgaatgaatattttataattaccaagatggttttgctgtgcctagcatttagaggtgccaatagcagttt tataagcgagaagcagaaaaatgagttacttagtaactataatccatatagtgctcctgttgtcaatggtactgcagttc acgataatatacagatatacattgtgaacatcgcctctatcagtacaactaaaatggagtacgagatgactttctactta cgacaacggtggtttgatcatcgactcgcgttcaatttcccagatgttgatgtcgcagagattgataaagatactattta taacttctggaaaccaaacatatacattgtgaatcaaaaagagtccgatttattcgatagtgaagtgtacagcaaactta ttaacatttttccaagtggagatgtacttttcagctctaggtatgccaattacacgtgtgcgggactgcatatgaatctg agtcggaacacaggatactacatatcgcatgtgtacctaccatgcatattggtcgtcatactatcctggatcagtttctg gtttggaacagacgctatattaccccgtctctccctgggcgtggtcacagtcctcacaatgatggtcattagtgccttga ccaatgcagacctcccgaaagtatcttattctacccttctggacgtctggttggctgtgtgcaatatatttgttttcgta gctttcctagaattcgtcttaatgcacctctggcttagagactgcaaacaagggaggcaaaccctgatggccgatggagg aactggaaaagcagaggaagtatggattagtttttaa |
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Protein
| Protein ID | pfu_aug2.0_972.1_08050.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_972.1_08050.t1 MEKMNEYFIITKMVLLCLAFRGANSSFISEKQKNELLSNYNPYSAPVVNGTAVHDNIQIYIVNIASISTTKMEYEMTFYL RQRWFDHRLAFNFPDVDVAEIDKDTIYNFWKPNIYIVNQKESDLFDSEVYSKLINIFPSGDVLFSSRYANYTCAGLHMNL SRNTGYYISHVYLPCILVVILSWISFWFGTDAILPRLSLGVVTVLTMMVISALTNADLPKVSYSTLLDVWLAVCNIFVFV AFLEFVLMHLWLRDCKQGRQTLMADGGTGKAEEVWISF |
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