Gene
| Gene Model ID | pfu_aug2.0_972.1_08054 |
|---|---|
| Locus | scaffold972.1 : 107966 ... 123239 : + |
| To GenomeBrowser | scaffold972.1:107966..123239 |
| Genes list of scaffold | scaffold972.1 |
| Synonym | pfu_aug1.0_2447.1_66334 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| glycine receptor subunit alpha-3 isoform x1 | GO:0005216 GO:0006810 GO:0016020 GO:0044699 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_972.1_08054.t2 | 1 | 1 | Neur_chan_LBD | 31 | 204 | 9.10844e-44 | 149.1 | 0.0 | 1.49939e-43 | 148.4 |
| pfu_aug2.0_972.1_08054.t2 | 2 | 1 | Neur_chan_memb | 240 | 361 | 1.2e-34 | 120.3 | 7.6e-31 | 2.2e-27 | 96.4 |
| pfu_aug2.0_972.1_08054.t2 | 2 | 2 | Neur_chan_memb | 335 | 391 | 1.2e-34 | 120.3 | 1.1e-10 | 3.2e-07 | 30.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_972.1_08054.t2 | gi|617493711|ref|XP_007578541.1| | PREDICTED: glycine receptor subunit alpha-3 isoform X1 [Poecilia formosa] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_972.1_08054.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_972.1_08054.t1 atggattacattatgagtttttattttcgtcagcgttggattgatccaagactgcagttcaattttactgatgtagatgt cttagaaatggataaatccgtcacagatgacatatggcttccagatgtttatatcatcaacgagaaaagagcggcctttc atgacatcaccgtaccaaataggctactgaacatataccccaatggagaagttttctatagcgttagaataactggtaca ttttcctgcaatatgaatctcagaaaatatcctctagacagacagatatgtgatatccggtttgaaagttatggatacag cgctagtaccattataataagatggaaggagtcagcagccaagttgtctcctaacttggtactgccacagtttgatttga ttaaacaggagccatttaattgcgatggtgtttattttgacggtaatttttactggattcgttcttttacagtaaattat acgtgcgttggattgcgattttatttggagcgaagtaaaggatattacataacacaggtctacgttccaagtgttcttat aataatactatcttggatgaatttctgggtgagcgttgatgcagttccagccagggtttccctgggtctcctcacagtcc tcacaatgaccacacagacgtccacggcactagctaaccttcagcgagtcggctacatcaaagccttggacgtttggttg gctgtttgtttattgtttgtatttgccgccctaatagagtttgcttttgtcaatgtcgcaactcgagtggaacagagaag gcggaagtcttctccaaccatatctgaactcgtaaaatctaccaccagctctaacaacaatgaagagaaggaggttaggg aaaatatttctaacaagatgaaattgatagaaatcatagcaagtaaagaacacatcgacacgcagacatcaagtgtaaaa ttacaattgaagttaatataa |
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| Transcript ID | pfu_aug2.0_972.1_08054.t2 |
| Definition | - |
>pfu_aug2.0_972.1_08054.t2 atgcttcatgtagtaatggagaatgttgttgtactctgcctaatcttgtcatcagcagaaataacaaggggaatggtgcc aagcgatgaacacatgaaggatctgtttgatgggtataatccaaaagttccagctgctagaaaagggcatcccgttttgg acacaatacagctttacatcgtcagtatcgactccattagcgacgctagtatggattacattatgagtttttattttcgt cagcgttggattgatccaagactgcagttcaattttactgatgtagatgtcttagaaatggataaatccgtcacagatga catatggcttccagatgtttatatcatcaacgagaaaagagcggcctttcatgacatcaccgtaccaaataggctactga acatataccccaatggagaagttttctatagcgttagaataactggtacattttcctgcaatatgaatctcagaaaatat cctctagacagacagatatgtgatatccggtttgaaagttatggatacagcgctagtaccattataataagatggaagga gtcagcagccaagttgtctcctaacttggtactgccacagtttgatttgattaaacaggagccatttaattgcgatggtg tttattttgacgtaaattatacgtgcgttggattgcgattttatttggagcgaagtaaaggatattacataacacaggtc tacgttccaagtgttcttataataatactatcttggatgaatttctgggtgagcgttgatgcagttccagccagggtttc cctgggtctcctcacagtcctcacaatgaccacacagacgtccacggcactagctaaccttcagcgagtcggctacatca aagccttggacgtttggttggctgtttgtttattgtttgtatttgccgccctaatagagtttgcttttgtcaatgtcgca actcgagtggaacagagaaggcggaagtcttctccaaccatatctgaactcgtaaaatctaccaccagctctaacaacaa tgaagaggaaaatgatagtcaggacagaaaaagtcaaaatgcccaacagaggaaagaaaaagcacgtaaaatagacaaac tctctagagtgttatttccatctgtatttgtgcttttcaatattgcctattggactttctacagtttatgggaacctgtt tttgattaa |
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Protein
| Protein ID | pfu_aug2.0_972.1_08054.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_972.1_08054.t1 MDYIMSFYFRQRWIDPRLQFNFTDVDVLEMDKSVTDDIWLPDVYIINEKRAAFHDITVPNRLLNIYPNGEVFYSVRITGT FSCNMNLRKYPLDRQICDIRFESYGYSASTIIIRWKESAAKLSPNLVLPQFDLIKQEPFNCDGVYFDGNFYWIRSFTVNY TCVGLRFYLERSKGYYITQVYVPSVLIIILSWMNFWVSVDAVPARVSLGLLTVLTMTTQTSTALANLQRVGYIKALDVWL AVCLLFVFAALIEFAFVNVATRVEQRRRKSSPTISELVKSTTSSNNNEEKEVRENISNKMKLIEIIASKEHIDTQTSSVK LQLKLI |
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| Protein ID | pfu_aug2.0_972.1_08054.t2 |
| Definition | - |
>pfu_aug2.0_972.1_08054.t2 MLHVVMENVVVLCLILSSAEITRGMVPSDEHMKDLFDGYNPKVPAARKGHPVLDTIQLYIVSIDSISDASMDYIMSFYFR QRWIDPRLQFNFTDVDVLEMDKSVTDDIWLPDVYIINEKRAAFHDITVPNRLLNIYPNGEVFYSVRITGTFSCNMNLRKY PLDRQICDIRFESYGYSASTIIIRWKESAAKLSPNLVLPQFDLIKQEPFNCDGVYFDVNYTCVGLRFYLERSKGYYITQV YVPSVLIIILSWMNFWVSVDAVPARVSLGLLTVLTMTTQTSTALANLQRVGYIKALDVWLAVCLLFVFAALIEFAFVNVA TRVEQRRRKSSPTISELVKSTTSSNNNEEENDSQDRKSQNAQQRKEKARKIDKLSRVLFPSVFVLFNIAYWTFYSLWEPV FD |
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