Gene
| Gene Model ID | pfu_aug2.0_972.1_08055 |
|---|---|
| Locus | scaffold972.1 : 128766 ... 135368 : + |
| To GenomeBrowser | scaffold972.1:128766..135368 |
| Genes list of scaffold | scaffold972.1 |
| Synonym | pfu_aug1.0_2447.1_66335 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| glycine receptor subunit alpha-3 isoform x2 | GO:0006821 GO:0007417 GO:0016020 GO:0016934 GO:0043200 GO:0045664 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_972.1_08055.t1 | 1 | 1 | Neur_chan_LBD | 1 | 114 | 4.8e-29 | 101.0 | 9.8e-33 | 7.3e-29 | 100.4 |
| pfu_aug2.0_972.1_08055.t1 | 2 | 1 | Neur_chan_memb | 122 | 211 | 4.8e-34 | 118.2 | 2.4e-29 | 1.8e-25 | 90.2 |
| pfu_aug2.0_972.1_08055.t1 | 2 | 2 | Neur_chan_memb | 239 | 288 | 4.8e-34 | 118.2 | 4.5e-11 | 3.4e-07 | 30.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_972.1_08055.t1 | gi|597752270|ref|XP_007237997.1| | PREDICTED: glycine receptor subunit alpha-3 [Astyanax mexicanus] | 0.0 |
| pfu_aug2.0_972.1_08055.t1 | gi|268833702|ref|NP_001161371.1| | glycine receptor subunit alpha-2 precursor [Danio rerio] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_972.1_08055.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_972.1_08055.t1 atgagattttactttagacaaagatggatggacactcgtttaaaacataatttttcggacgcaggatttgtagaaatcga catgaagctgattaacgatatatgggtcccggatgttttcataaccaatgaaaaacaagcacatttccacgacgtgacag tgcccaataagctgatacaagttcatacaagtggagaaattctttacagtgttagaataagtggacagtttacctgcgac atgaatctttataaatatccactggacaggcaaatatgtgaaatacgatttgaaagttttaactacacatgcgtcagtct gaagtttatgttggagagaaaaaggggatattacatcatacaagtatacattcctagtatcctcatttgcatactctcat gggtcaacttctggttggatgtcgatgctgttcccgctaggatatctgttggcttgttgaccgttctaactatggccaca cagatagctactgccctagacagtccacagagtgtttcctacatcaaagctctagatgtgtggttggctgcctgtctatt tttcgtatttgccgctttgattgaatttgcgtatgtaaatgtgacctccagagttcaacatcggaggacccaatcagata tcttggatttgcttacctcctcaacagagttcatagaccggagtagtaaggacaagaaagatgagatctggcacaagttc atctccagcatcgtagagaatatccataaagatgaatatcagcaaggatacacatctagcgacaaagagaaggccaggag agttgacaagatatccaggattttatttcctgctatgttcttactgttcaacgttgtatactggaccttgtatcttgtat gggaacctgttcaggatctatga |
|
Protein
| Protein ID | pfu_aug2.0_972.1_08055.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_972.1_08055.t1 MRFYFRQRWMDTRLKHNFSDAGFVEIDMKLINDIWVPDVFITNEKQAHFHDVTVPNKLIQVHTSGEILYSVRISGQFTCD MNLYKYPLDRQICEIRFESFNYTCVSLKFMLERKRGYYIIQVYIPSILICILSWVNFWLDVDAVPARISVGLLTVLTMAT QIATALDSPQSVSYIKALDVWLAACLFFVFAALIEFAYVNVTSRVQHRRTQSDILDLLTSSTEFIDRSSKDKKDEIWHKF ISSIVENIHKDEYQQGYTSSDKEKARRVDKISRILFPAMFLLFNVVYWTLYLVWEPVQDL |
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