Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_972.1_08056
Locus scaffold972.1 : 169106 ... 171398 : +
To GenomeBrowser scaffold972.1:169106..171398
Genes list of scaffold scaffold972.1
Synonym pfu_aug1.0_7489.1_17122

Manual annotation
Annotation by Blast2GO
Annotation GO
glycine receptor subunit alpha-3- partial GO:0005216 GO:0006811 GO:0016020 GO:0044763

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_972.1_08056.t1 1 1 Neur_chan_LBD 1 75 1.1e-17 63.8 8.7e-22 1.3e-17 63.7

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_972.1_08056.t1 gi|556978168|ref|XP_005996205.1| PREDICTED: glycine receptor subunit alpha-2-like, partial [Latimeria chalumnae] 6.0e-17
pfu_aug2.0_972.1_08056.t1 gi|584024030|ref|XP_006806641.1| PREDICTED: glycine receptor subunit alpha-2-like [Neolamprologus brichardi] 7.0e-17

Transcript
Transcript IDpfu_aug2.0_972.1_08056.t1
Definition-
>pfu_aug2.0_972.1_08056.t1
atgagtttttatctacgccaaagatggaacgatagtagacttgtatacaatgaaagtctgggtatcgacgtcatagagct
agattcccggataatggacagtatctggactcctgacatttacataatcaacgaaaaagaggctcgcttccattacgtca
caatgccaaatagaatgatgtatctttatccagatggaaatatcctttacagtgcaaggtttgtttcgttaaaatttgct
attttctgtaattcagtgacgtataatatgaattatggcagagcccaggaagcgtttttcaagtga

Protein
Protein IDpfu_aug2.0_972.1_08056.t1
Definition-
>pfu_aug2.0_972.1_08056.t1
MSFYLRQRWNDSRLVYNESLGIDVIELDSRIMDSIWTPDIYIINEKEARFHYVTMPNRMMYLYPDGNILYSARFVSLKFA
IFCNSVTYNMNYGRAQEAFFK

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495