Gene
Gene Model ID | pfu_aug2.0_972.1_08056 |
---|---|
Locus | scaffold972.1 : 169106 ... 171398 : + |
To GenomeBrowser | scaffold972.1:169106..171398 |
Genes list of scaffold | scaffold972.1 |
Synonym | pfu_aug1.0_7489.1_17122 |
Manual annotation
Annotation by Blast2GO
Annotation | GO |
---|---|
glycine receptor subunit alpha-3- partial | GO:0005216 GO:0006811 GO:0016020 GO:0044763 |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_972.1_08056.t1 | 1 | 1 | Neur_chan_LBD | 1 | 75 | 1.1e-17 | 63.8 | 8.7e-22 | 1.3e-17 | 63.7 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_972.1_08056.t1 | gi|556978168|ref|XP_005996205.1| | PREDICTED: glycine receptor subunit alpha-2-like, partial [Latimeria chalumnae] | 6.0e-17 |
pfu_aug2.0_972.1_08056.t1 | gi|584024030|ref|XP_006806641.1| | PREDICTED: glycine receptor subunit alpha-2-like [Neolamprologus brichardi] | 7.0e-17 |
Transcript
Transcript ID | pfu_aug2.0_972.1_08056.t1 |
---|---|
Definition | - |
>pfu_aug2.0_972.1_08056.t1 atgagtttttatctacgccaaagatggaacgatagtagacttgtatacaatgaaagtctgggtatcgacgtcatagagct agattcccggataatggacagtatctggactcctgacatttacataatcaacgaaaaagaggctcgcttccattacgtca caatgccaaatagaatgatgtatctttatccagatggaaatatcctttacagtgcaaggtttgtttcgttaaaatttgct attttctgtaattcagtgacgtataatatgaattatggcagagcccaggaagcgtttttcaagtga |
Protein
Protein ID | pfu_aug2.0_972.1_08056.t1 |
---|---|
Definition | - |
>pfu_aug2.0_972.1_08056.t1 MSFYLRQRWNDSRLVYNESLGIDVIELDSRIMDSIWTPDIYIINEKEARFHYVTMPNRMMYLYPDGNILYSARFVSLKFA IFCNSVTYNMNYGRAQEAFFK |