Gene
| Gene Model ID | pfu_aug2.0_972.1_08057 |
|---|---|
| Locus | scaffold972.1 : 173066 ... 180483 : + |
| To GenomeBrowser | scaffold972.1:173066..180483 |
| Genes list of scaffold | scaffold972.1 |
| Synonym | pfu_aug1.0_7489.1_17122 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| glycine receptor subunit alpha-4- partial | GO:0005886 GO:0006811 GO:0015276 GO:0044425 GO:0044763 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_972.1_08057.t1 | 1 | 1 | Neur_chan_LBD | 1 | 138 | 1.2e-33 | 116.1 | 4.6e-37 | 1.7e-33 | 115.5 |
| pfu_aug2.0_972.1_08057.t1 | 1 | 1 | Neur_chan_memb | 167 | 255 | 1.6e-29 | 103.4 | 5.5e-33 | 2.0e-29 | 103.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_972.1_08057.t1 | gi|676434108|ref|XP_009047119.1| | hypothetical protein LOTGIDRAFT_111366, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_972.1_08057.t1 | gi|736168398|ref|XP_010765107.1| | PREDICTED: glycine receptor subunit alpha-4-like, partial [Notothenia coriiceps] | 0.0 |
| pfu_aug2.0_972.1_08057.t1 | gi|657588039|ref|XP_008298340.1| | PREDICTED: glycine receptor subunit alpha-2-like [Stegastes partitus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_972.1_08057.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_972.1_08057.t1 atgagtttttatctacgtcaaagatggaacgatagtagacttgtatacaatgaaagtctgggtatcgacgtcatagagct agattcccggataatggacagtatctggactcctgacatttacataatcaacgaaaaagaggctcgcttccattacgtca caatgccaaatagaatgatgtatctttatccggatggaaatatcctttacagtgcaagaatatctggtaccttctcgtgc ttactacaactacacaaatatcccctagacaatcaaatctgcgacttacgcatggaaagttatagtcacagtgcaagatc agtgtacataaggtggcatgatcagccagtcatacagtcgcccaagctaactcttccgcagttcagcataacagaaacaa gctctttcatttgtgacactacatacatggaaattcaatatacatgtgttggtatgaagatatttctagagagagatatt ggatattatatgatccagatatacgtcccaagtattttgattgtgattctctcctttgtgaacttctggcttaacgtaga tgcagtacccgctaggattactctaggtctgctgaccgttcttacaatgactacacaaagtgtagcagctgtagcaagca tacagaaagtatcatacataaaggcgctagacatctggttgcaggcatgcctcatttttgttttcgcggcattgctggaa tttgcatgtgtgaatgtgtcattccgagtggaaacgcgacggaaatcggtagcggatttaccggcattgatagcacaatc aacagttgatgggaaacctcaaacgaacggccattgcaaacagaatcgtaatgtatga |
|
Protein
| Protein ID | pfu_aug2.0_972.1_08057.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_972.1_08057.t1 MSFYLRQRWNDSRLVYNESLGIDVIELDSRIMDSIWTPDIYIINEKEARFHYVTMPNRMMYLYPDGNILYSARISGTFSC LLQLHKYPLDNQICDLRMESYSHSARSVYIRWHDQPVIQSPKLTLPQFSITETSSFICDTTYMEIQYTCVGMKIFLERDI GYYMIQIYVPSILIVILSFVNFWLNVDAVPARITLGLLTVLTMTTQSVAAVASIQKVSYIKALDIWLQACLIFVFAALLE FACVNVSFRVETRRKSVADLPALIAQSTVDGKPQTNGHCKQNRNV |
|