Gene
| Gene Model ID | pfu_aug2.0_976.1_21307 |
|---|---|
| Locus | scaffold976.1 : 97546 ... 157265 : + |
| To GenomeBrowser | scaffold976.1:97546..157265 |
| Genes list of scaffold | scaffold976.1 |
| Synonym | pfu_aug1.0_15505.1_03621 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| negative elongation factor d-like | GO:0003746 GO:0006414 GO:0016020 GO:0032021 GO:0045892 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_976.1_21307.t1 | 1 | 1 | Zona_pellucida | 586 | 758 | 3.3e-12 | 46.4 | 1.2e-15 | 5.8e-12 | 45.6 |
| pfu_aug2.0_976.1_21307.t1 | 1 | 1 | TH1 | 870 | 950 | 8.1e-31 | 106.8 | 2.2e-34 | 1.1e-30 | 106.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_976.1_21307.t1 | gi|291239261|ref|XP_002739542.1| | PREDICTED: negative elongation factor D [Saccoglossus kowalevskii] | 7.0e-31 |
| pfu_aug2.0_976.1_21307.t1 | gi|390339864|ref|XP_003725107.1| | PREDICTED: negative elongation factor C/D [Strongylocentrotus purpuratus] | 2.0e-30 |
| pfu_aug2.0_976.1_21307.t1 | gi|663292803|ref|XP_008502275.1| | PREDICTED: negative elongation factor C/D-like, partial [Calypte anna] | 3.0e-30 |
| pfu_aug2.0_976.1_21307.t1 | gi|146332423|gb|ABQ22717.1| | negative elongation factor C/D-like protein [Callithrix jacchus] | 5.0e-30 |
| pfu_aug2.0_976.1_21307.t1 | gi|146332621|gb|ABQ22816.1| | negative elongation factor C/D-like protein [Callithrix jacchus] | 9.0e-30 |
Transcript
| Transcript ID | pfu_aug2.0_976.1_21307.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_976.1_21307.t1 atgcaggacaatgctcctgttcgcaagtctgtcactgccatggctgccattcatgattgtggctttaatttgatcgagaa tcagccttattcacctgatcttgctccaacagactttcatctattccgaaaactgaaagcggctatttctggcacccact tagagtccgatgatgatgtcatacttgcagtggatggctttctgaccagtcaagataaggagttctttaaaagtggaatt gaggcccttaaacaccgaattgttgttgatatctttccagtgtatagctttccacggtcatttccgtttccggttgcagc gccatatcccccaccactaccatccaccaccaccaccacagccaagccaacgggagaacaggagtttgagttagaggaga caactgtcacgagcacaaccaccaccaccacagcacggccccacccacaacacccccagtaccaccccaggcatcaccct ccacactatcctcgccaccacccacctcaacaaggacaggaacatcagccagagccgcagaggaattcgcgtccccgccc gagaccgtacccgccaagaagacggaggccaaatttcagaggtcgggctggaaataataatgctatgggtccgaggggca acccaggccctcggttcaatgttagggacctaaacccatttttaacaaatggaaataatggccaaaagcaaaatatggga ccgtcaattcggcaaccgtttggtgggagaccaaattttggaagaccttttcaaagacgaccttcttttaattttagagg acgaaattttaaccggtcaaatttcagatttaatggaggtccaaatggtggtcccgcggtaaatccacccagaaatagtg gccctgcatataatcaaccatacaatggcggtaacggcgccccatacaatggtcaaactaacagcccagcttacagatac ggcgctaatgcgaacaacgctggaccaccaggtccaaatggtggtcccgcggtaaatccacccagaaatagtggccctgc atataatcaaccatacaatggcggtaacggcgccccatacaacggtcaaactaacagcccagcttacagatacggcgcta atgcgaacaacgctggaccaccagggaaccgcccacaagctttaccacgacaacggccaccagcaactttgccaccaaac attccaaagccaccacaatccgccacaacgccacctgaaccagcacagaaaccaataggagaaaactgtccgacattccg ctataccgtggacaggaatttcgtggaatttcatacaatgcctggtgaatgtaaaatacaaattcagtatcctccagccg gacgaggttttgatcgctacgcaaccgtcagcacacacagatattcaccaatcacaaatcctgggtatttaatcggtttg ttctcttacgcagacttcataaactcgttggaggattttactggaagctcaaagacatcgaagtacagaagaaccatgga tatcgcctatacagtatgtttgatttttgtgattacaacatctctggtcatggcagacttacagtacgaatgtacaaaag gaaccaatggaaaagttataatttctgtcgataaaggattaaataacctgacatctgccgatatgacagtacctggaaat aagccatgcatcgtcactaatgaaacagcggaattccaactcaaagattgccctgcggatacagatataaaagtgaaagt gacaatggacaaaagaactgatcatgtagtgaccgacaaggacatcgctgcttacacactacgatgccactacgattcta aaatattctatgccatggtctcagctgctcatatatcaattacagatgctacaccaacgccacctgcagtcagtatccat aatgttaaaatgccatcagcaacgccacctacatttactatgaaactagataaaacgacagtcaacattggagataaagt aaagataactatttcaactacaggaaatgagacattttcaccagaagaatgtgtagccatgggtaaaaattacaaccata cactttggagctcagattgtaacgatgttgatggcgaactttttaccgcaaaagaatggaagaatgaaaccagcacttca attacacacagtttctttgcttttcgattcactgacagttccgaaattactctgatatgtaaacttaaagtatgtcctgc cggtctggaagacaagtgctctttgggttgtgtgacaggtggaggtaatggagtaacccaggctaccggtaggaggcggc gctccatcacagaggaggacactgctgtggtgcaaaccagcttcattgtatcagattcagagtctgcattcacggaatct tctgccgggaaaagatacttagcttctgacttcaacttcacttacagatacatagacgatgtgttgtccatcaataatcc aaaattcgcagattacctcagcagtatctatccttcggaacttgaagtcaaagaaactacagagacaaataattcagcat cctatttggacattatgttgtcctacgacactgatggtcatatgaacacctcactcagaggttttgtgattcccgttgtt acgtatataaagaactgcttagagaaacaggatactgacatatcattgataagacattttgtcactgaggtacttgacat cattgcacctccatatacaccagaatttgctcagttatttttaccgttgttggagagcaaagacattacagcttcaatac gatcagaagatggaacagacccagtatcagaatttataactcattgcaagccttga |
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Protein
| Protein ID | pfu_aug2.0_976.1_21307.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_976.1_21307.t1 MQDNAPVRKSVTAMAAIHDCGFNLIENQPYSPDLAPTDFHLFRKLKAAISGTHLESDDDVILAVDGFLTSQDKEFFKSGI EALKHRIVVDIFPVYSFPRSFPFPVAAPYPPPLPSTTTTTAKPTGEQEFELEETTVTSTTTTTTARPHPQHPQYHPRHHP PHYPRHHPPQQGQEHQPEPQRNSRPRPRPYPPRRRRPNFRGRAGNNNAMGPRGNPGPRFNVRDLNPFLTNGNNGQKQNMG PSIRQPFGGRPNFGRPFQRRPSFNFRGRNFNRSNFRFNGGPNGGPAVNPPRNSGPAYNQPYNGGNGAPYNGQTNSPAYRY GANANNAGPPGPNGGPAVNPPRNSGPAYNQPYNGGNGAPYNGQTNSPAYRYGANANNAGPPGNRPQALPRQRPPATLPPN IPKPPQSATTPPEPAQKPIGENCPTFRYTVDRNFVEFHTMPGECKIQIQYPPAGRGFDRYATVSTHRYSPITNPGYLIGL FSYADFINSLEDFTGSSKTSKYRRTMDIAYTVCLIFVITTSLVMADLQYECTKGTNGKVIISVDKGLNNLTSADMTVPGN KPCIVTNETAEFQLKDCPADTDIKVKVTMDKRTDHVVTDKDIAAYTLRCHYDSKIFYAMVSAAHISITDATPTPPAVSIH NVKMPSATPPTFTMKLDKTTVNIGDKVKITISTTGNETFSPEECVAMGKNYNHTLWSSDCNDVDGELFTAKEWKNETSTS ITHSFFAFRFTDSSEITLICKLKVCPAGLEDKCSLGCVTGGGNGVTQATGRRRRSITEEDTAVVQTSFIVSDSESAFTES SAGKRYLASDFNFTYRYIDDVLSINNPKFADYLSSIYPSELEVKETTETNNSASYLDIMLSYDTDGHMNTSLRGFVIPVV TYIKNCLEKQDTDISLIRHFVTEVLDIIAPPYTPEFAQLFLPLLESKDITASIRSEDGTDPVSEFITHCKP |
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