Gene
| Gene Model ID | pfu_aug2.0_988.1_27958 |
|---|---|
| Locus | scaffold988.1 : 16133 ... 27695 : - |
| To GenomeBrowser | scaffold988.1:16133..27695 |
| Genes list of scaffold | scaffold988.1 |
| Synonym | pfu_aug1.0_18185.1_32891 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_988.1_27958.t1 | 2 | 1 | HLH | 268 | 281 | 1.1e-14 | 53.9 | 0.11 | 1600.0 | -1.2 |
| pfu_aug2.0_988.1_27958.t1 | 2 | 2 | HLH | 367 | 416 | 1.1e-14 | 53.9 | 1.0e-18 | 1.5e-14 | 53.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_988.1_27958.t1 | gi|676429624|ref|XP_009045661.1| | hypothetical protein LOTGIDRAFT_224211 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_988.1_27958.t1 | gi|524891375|ref|XP_005102221.1| | PREDICTED: sterol regulatory element-binding protein 1-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_988.1_27958.t1 | gi|260832924|ref|XP_002611407.1| | hypothetical protein BRAFLDRAFT_117231 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_988.1_27958.t1 | gi|658864398|ref|XP_008415040.1| | PREDICTED: sterol regulatory element-binding protein 1 [Poecilia reticulata] | 0.0 |
| pfu_aug2.0_988.1_27958.t1 | gi|617417749|ref|XP_007557456.1| | PREDICTED: sterol regulatory element-binding protein 1 [Poecilia formosa] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_988.1_27958.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_988.1_27958.t1 atggcgaatatggacaaccagtggcctccaccggctgcgaattttaatgaaaatggaagtgaattaattagtgaacacga tttaagtaatgtgggaatggatgatctagatgatatagtcaaatatttgaataatgacactattggttgtgatggatcct tatttgaggatcagcttggcggattcactgatgcgccaatgcaagatgctggagtgaaacaagaactaagtttagacgat cagttcgacttgtctgcacaacacaacacctcgagtgttctgctcaatgacagtaacaattcctcagttttgctaaatga tgccagcttaagtcttgggacgcttgatgcgtttgatctccttagctctaacgaggttacgaaatctcctgttgtgaaca tttctcattcaaacaaccccagcagctccatacagttgcagcaagctgcattgaaacttcaaaagcaagcagagttggtg gcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaacagaagttgcgtttacagttgcaacagcagc agcagaaacaagtccaggctcagctattacagcaacagctaaaacttatcttgcaacaagcaacacagcaacaagttgtg aaagtagaacaagcacctgctcaggtagcaacaacacaggttgtcacacaacctcagcagcaacctgttagtcaactcaa tatacagcaacttcagcagttgctacttcaaacacaagctgcaaagtccacagtggtcaccaatcctacacctatcgtct cacaaatccagtctcagccacaaacggtatcaaatgccaccacaaatatagtcaacctctcatcaatatcttcaccctct gtcaccagtagtgctgcgacatcacaatctcctgtccatactgttgtcactagcattcctatccaggttgtagagtcaga caaagtccctatcaatcgactgagtccttcagctggcaaagtgccaaaaaagggagagaagaggacatcccacaatgcca tagaaaaacgctacagactgagtattaatgacaaaatcactgaactaaaagatctagttgctggtactgaagccaagttg aacaagtcagcagtattaaggaaagcaattgaccatatcagataccttcataatgtgaataaacgtcttaaagaagagaa cttggctcttaaattggcagcaacgaaaaatggcagtttgcaagagttaattcagagtacaacaggtttgcttactcctc ccagttcagagggaggctcgccccttcattcctaccctagtgatggagagtcgcctcctaatagtcctacatataattct cagaattcctcagagacgtacactgggaaggtgtttggaggaatgaaggatcagtccaggatggctctgtgtgtatttat gtttgctgttcttgccttcaatccttttggtgcaatgataaacacggctggtaaaagggagagcttcataagtggagagt atagctccaggaccttgaaggcaattgatgctggggtaatggcaaaactcttcatctttggtgaacctgtggtcaagaag aatagttttacagctgttacattctacagacacctggctcaagcagatactcatctggaaaaaggaaattattcctgggc tacagaccaactgagtcgagctctagcttgtataggaagaccattacccacctctaacttggacttggtgtctggacttg cttggaacttgttacgttcattgacccacaggctgttctggggaaaatggctgtttaggaaggctggcttgttgagaagt aactctgatgaggatgtgaaaacatcagctgttaatgcagctttagcgtaccacaaactcaatcaaatgcacctgacagg taatgtaccggggagtacgtggtggggattatacatcactttgaatgctgtaaatctggcagaagctgctggaaatacca tgcctttaacacagctggcagaggtgtatgccatggcggcattaagtgtcaaaattggacttccttggaaattgcagtat ttggctagatatttcctcagtagatgtcgtcgtgcattttctaagagtggagaccagctgccacctaaccttcagtggct atctcacccagaaggatatcgctttttcgtcggtggcaaatggcacatgggtggcaaagacagcctcttcactaccatag ggaatccagcggatccattagaacatgtggcccagatgtacagggatcatctattggagaagggtatgttctccctggta actccagagaagaggaaaccagccggtccctcccaggctgcggaggtgttactatatacacagctcctatccgatagtgc ttcaactacgaaaacaagccactccaacatgtctccatcagggattactaatattgctggttctgatgaagtagccagat ggtgggcagccattataacggtggccattcattggttgactggtgatgatgaaaatgcagaaaatcattacatcatatgt gattcatttcctcagaaactacagaaatcagatgatcctctccctaaggcagttttggttgctttccgagccaggagaaa cctgattacaaattcccataatgcttcacactgcatacgacaatgtgacagagcaggaagaatgctgagggaaagcctga agctctcatattcccaggaaaatgagcagatagcaaagctcgtacagcttttggttagtgactggttgttaacaacgagg tccgatatctgggagagaaacaactctggagattctgttacatccgtgtcacaaacggaattaatagcattccaacaaga tctcaacagcctcagaaaactggctcaaacattcaaatctatattacccaaggtattcctgcacgaggctacagctcgta tgatggcaggtgctagtccagcccgtacacaacaactgttagataggagtataaggagaagacatacgtccaagtcagag aaaaacggcacagagagttcagacagtgaggtacctgacagggaacaagccaaggccttgttgatggcgggtcgtcatct cccacctgctatattaccatccaatgaggatcgtgtcacccttatatctgaggcaagcaagatgtatgaagtccttggtg ataaaaaatcagtacagagctgccgtcgcgttctcatgcaatttgaaaacaacacacctgtgcctgttcagtgctcatga |
|
Protein
| Protein ID | pfu_aug2.0_988.1_27958.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_988.1_27958.t1 MANMDNQWPPPAANFNENGSELISEHDLSNVGMDDLDDIVKYLNNDTIGCDGSLFEDQLGGFTDAPMQDAGVKQELSLDD QFDLSAQHNTSSVLLNDSNNSSVLLNDASLSLGTLDAFDLLSSNEVTKSPVVNISHSNNPSSSIQLQQAALKLQKQAELV XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQKLRLQLQQQQQKQVQAQLLQQQLKLILQQATQQQVV KVEQAPAQVATTQVVTQPQQQPVSQLNIQQLQQLLLQTQAAKSTVVTNPTPIVSQIQSQPQTVSNATTNIVNLSSISSPS VTSSAATSQSPVHTVVTSIPIQVVESDKVPINRLSPSAGKVPKKGEKRTSHNAIEKRYRLSINDKITELKDLVAGTEAKL NKSAVLRKAIDHIRYLHNVNKRLKEENLALKLAATKNGSLQELIQSTTGLLTPPSSEGGSPLHSYPSDGESPPNSPTYNS QNSSETYTGKVFGGMKDQSRMALCVFMFAVLAFNPFGAMINTAGKRESFISGEYSSRTLKAIDAGVMAKLFIFGEPVVKK NSFTAVTFYRHLAQADTHLEKGNYSWATDQLSRALACIGRPLPTSNLDLVSGLAWNLLRSLTHRLFWGKWLFRKAGLLRS NSDEDVKTSAVNAALAYHKLNQMHLTGNVPGSTWWGLYITLNAVNLAEAAGNTMPLTQLAEVYAMAALSVKIGLPWKLQY LARYFLSRCRRAFSKSGDQLPPNLQWLSHPEGYRFFVGGKWHMGGKDSLFTTIGNPADPLEHVAQMYRDHLLEKGMFSLV TPEKRKPAGPSQAAEVLLYTQLLSDSASTTKTSHSNMSPSGITNIAGSDEVARWWAAIITVAIHWLTGDDENAENHYIIC DSFPQKLQKSDDPLPKAVLVAFRARRNLITNSHNASHCIRQCDRAGRMLRESLKLSYSQENEQIAKLVQLLVSDWLLTTR SDIWERNNSGDSVTSVSQTELIAFQQDLNSLRKLAQTFKSILPKVFLHEATARMMAGASPARTQQLLDRSIRRRHTSKSE KNGTESSDSEVPDREQAKALLMAGRHLPPAILPSNEDRVTLISEASKMYEVLGDKKSVQSCRRVLMQFENNTPVPVQCS |
|