Gene
| Gene Model ID | pfu_aug2.0_988.1_27961 |
|---|---|
| Locus | scaffold988.1 : 77016 ... 98012 : + |
| To GenomeBrowser | scaffold988.1:77016..98012 |
| Genes list of scaffold | scaffold988.1 |
| Synonym | pfu_aug1.0_3550.1_16133 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_988.1_27961.t1 | 3 | 1 | AF-4 | 35 | 211 | 1.7e-21 | 75.9 | 0.66 | 4900.0 | -5.1 |
| pfu_aug2.0_988.1_27961.t1 | 3 | 2 | AF-4 | 242 | 646 | 1.7e-21 | 75.9 | 2.0 | 15000.0 | -11.3 |
| pfu_aug2.0_988.1_27961.t1 | 3 | 3 | AF-4 | 647 | 781 | 1.7e-21 | 75.9 | 2.3e-25 | 1.7e-21 | 75.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_988.1_27961.t1 | gi|602651134|ref|XP_007431953.1| | PREDICTED: AF4/FMR2 family member 4 isoform X2 [Python bivittatus] | 7.0e-15 |
| pfu_aug2.0_988.1_27961.t1 | gi|602651132|ref|XP_007431952.1| | PREDICTED: AF4/FMR2 family member 4 isoform X1 [Python bivittatus] | 7.0e-15 |
| pfu_aug2.0_988.1_27961.t1 | gi|731258046|ref|XP_010641552.1| | PREDICTED: AF4/FMR2 family member 3 [Fukomys damarensis] | 9.0e-15 |
Transcript
| Transcript ID | pfu_aug2.0_988.1_27961.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_988.1_27961.t1 atggattcacgattagcaaaattgaggagctatttaataatgaaaaattcatcaatatccagttggtcgttggactcatt aatcaatcagttcaacaatacacaatctccaatcacacctataccatcttcatcaagttctaggaattccgataggaaaa atgatccacgatctcctcataaagacgaaaatgatgaaatgctttccaaattcatcacaagtgaaatcattgacaaagac aacagtcctacggaaatttcccatatttcccccctccctcaaactcccccctcttctagtgcctgtaaatggacaagtgc ttctttacacagctcagaaagtgctaattcaaaatcacctcgtgtgtctcattcttcccagaatgctcacaagtcacgtg ataaaaagaatgaaaggacggttgaccctgtcggtgcctttggcatcaagaaacgaaaatctagttattccagtgacagc tcaaattctcataaatctcaagttagaactcctcagaaggatattaaaagttcaacaccaaattctagcaagtctaataa gcatagaaactctacacataaaagtccggccaagtcgacgttaacagacagtgacgacagcgatgtggacatcgaatcct ttactcctggcaaggatgccattcccacagcattgttaaacaaagctgatggtgaaaacgtcgtcagaagtgaaaatgtg gtcaaaagtgaaaatgtggtcaaaagtgatagtactcgaaaaagtgataaaaatcgaaatgttacaaaacccaacaacaa atccaaagaaaggacgaaagaaaaaccacgtaaacagaagaataatttaagtaatagtaaagaaagaacaccagtgaaat gtgatgttaaaacgagttcttctgctagttctaatggaagtggtagcatagagaaagatgttcgaaatatttttagtgaa ataggctcagaaaagcttaaccttttatcaccaattccaaatctccctgaaaaatcaaatattctgtctaggactacaaa atctcccccaaaagtgcacgatttacagaagtgtctcacatacaaaaacggaaaaccttcaattatggtgcgtttaaatt tatctcttttaccaaaaccatggaatacttctacatcgttggcgcttgattctaagagtgaaaattgtgacaacattgtg atatcgccacagatagagagtgtgatatcgcctcagatagagagtgttcgattaccacaaaaccccgtgatggatcataa tagtgataacgaaaacaccacagaatatggtgaaggtagtagtgatagtgatagtgatatggacctagattcaccagatt ctactaacctgatagagactcccaatcctttagaacaacaagtgaaaagggattacattcctatagacagtagattgact actacgccagaaagtaaaaattcccctgtgttctcagctcattcaccaagacaccgcaaatcctcaaaacgcaagcaaga ctctgacagaacagatgaccagaaacgtccaaaaccagccagaaataatacccctatagagaaagattctcttcaaaaag agaaagaaagtcacaaggatagtcgtgagtgggattggaagcatccacgaaggtcagaggtcaaggccagacgagacagt agcagtagtttatctagtcaacctggttcagcatcactaaagcagaccaagacacagggcaccgagccagacgaaccact cgtcaaatctgaagtcaaagcaagtgacctagaggaaaagaatgacaaaccagctaagaccttgacctacttggaggctg tcctttctttcatccagtggtgttatgtcatggaaaaagatgccatttccgacattagcaaaatccacaaaatgtacttg gaaacatacaagctcattagtttacgtatccagtcattactatgcctaaaattattcaaattgaagaaagttgaaactat gaaactcaagaaggctattgacgaatataataagccttcctccaagcccgcccatgctccgtctccccaccagtcaagct ggaatggacggtcaacagtcaccccctcacactcctctcccactccttcccctgctggcagtatcggatctgtggattca caggggagtgatctcataccttccaaactgcctaacggaaatgctgcctcgtgtgtatccatgtcgtcccccgctccggg cgtggtcagtgtcccccagagaatacattccctcacccagcagtacctctcctccactaatgtcctggttcagtgccatg acttctgggaccaggctgatgtaaatatgcaggagtatcaaggttag |
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Protein
| Protein ID | pfu_aug2.0_988.1_27961.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_988.1_27961.t1 MDSRLAKLRSYLIMKNSSISSWSLDSLINQFNNTQSPITPIPSSSSSRNSDRKNDPRSPHKDENDEMLSKFITSEIIDKD NSPTEISHISPLPQTPPSSSACKWTSASLHSSESANSKSPRVSHSSQNAHKSRDKKNERTVDPVGAFGIKKRKSSYSSDS SNSHKSQVRTPQKDIKSSTPNSSKSNKHRNSTHKSPAKSTLTDSDDSDVDIESFTPGKDAIPTALLNKADGENVVRSENV VKSENVVKSDSTRKSDKNRNVTKPNNKSKERTKEKPRKQKNNLSNSKERTPVKCDVKTSSSASSNGSGSIEKDVRNIFSE IGSEKLNLLSPIPNLPEKSNILSRTTKSPPKVHDLQKCLTYKNGKPSIMVRLNLSLLPKPWNTSTSLALDSKSENCDNIV ISPQIESVISPQIESVRLPQNPVMDHNSDNENTTEYGEGSSDSDSDMDLDSPDSTNLIETPNPLEQQVKRDYIPIDSRLT TTPESKNSPVFSAHSPRHRKSSKRKQDSDRTDDQKRPKPARNNTPIEKDSLQKEKESHKDSREWDWKHPRRSEVKARRDS SSSLSSQPGSASLKQTKTQGTEPDEPLVKSEVKASDLEEKNDKPAKTLTYLEAVLSFIQWCYVMEKDAISDISKIHKMYL ETYKLISLRIQSLLCLKLFKLKKVETMKLKKAIDEYNKPSSKPAHAPSPHQSSWNGRSTVTPSHSSPTPSPAGSIGSVDS QGSDLIPSKLPNGNAASCVSMSSPAPGVVSVPQRIHSLTQQYLSSTNVLVQCHDFWDQADVNMQEYQG |
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