Gene
| Gene Model ID | pfu_aug2.0_988.1_27962 |
|---|---|
| Locus | scaffold988.1 : 102188 ... 132975 : - |
| To GenomeBrowser | scaffold988.1:102188..132975 |
| Genes list of scaffold | scaffold988.1 |
| Synonym | pfu_aug1.0_3550.1_16131 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_988.1_27962.t1 | 1 | 1 | F-box | 340 | 386 | 4.1e-08 | 32.6 | 5.1e-11 | 8.5e-08 | 31.6 |
| pfu_aug2.0_988.1_27962.t1 | 1 | 1 | F-box-like | 341 | 386 | 3.4e-13 | 49.0 | 4.9e-16 | 8.1e-13 | 47.8 |
| pfu_aug2.0_988.1_27962.t1 | 5 | 1 | WD40 | 441 | 467 | 1.8e-40 | 135.3 | 1.4e-08 | 2.3e-05 | 24.1 |
| pfu_aug2.0_988.1_27962.t1 | 4 | 1 | Nup160 | 448 | 477 | 1.2e-09 | 36.8 | 0.00041 | 0.67 | 8.0 |
| pfu_aug2.0_988.1_27962.t1 | 5 | 2 | WD40 | 471 | 507 | 1.8e-40 | 135.3 | 2.4e-10 | 3.9e-07 | 29.6 |
| pfu_aug2.0_988.1_27962.t1 | 4 | 2 | Nup160 | 494 | 520 | 1.2e-09 | 36.8 | 1.0e-05 | 0.017 | 13.2 |
| pfu_aug2.0_988.1_27962.t1 | 5 | 3 | WD40 | 511 | 555 | 1.8e-40 | 135.3 | 1.5e-12 | 2.4e-09 | 36.6 |
| pfu_aug2.0_988.1_27962.t1 | 5 | 4 | WD40 | 560 | 595 | 1.8e-40 | 135.3 | 2.1e-12 | 3.5e-09 | 36.1 |
| pfu_aug2.0_988.1_27962.t1 | 4 | 3 | Nup160 | 581 | 607 | 1.2e-09 | 36.8 | 0.00089 | 1.5 | 6.8 |
| pfu_aug2.0_988.1_27962.t1 | 5 | 5 | WD40 | 599 | 635 | 1.8e-40 | 135.3 | 1.1e-07 | 0.00019 | 21.1 |
| pfu_aug2.0_988.1_27962.t1 | 4 | 4 | Nup160 | 620 | 654 | 1.2e-09 | 36.8 | 2.6e-05 | 0.043 | 11.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_988.1_27962.t1 | gi|488559398|ref|XP_004469876.1| | 0.0 | |
| pfu_aug2.0_988.1_27962.t1 | gi|667270815|ref|XP_008570820.1| | PREDICTED: F-box/WD repeat-containing protein 7 isoform X3 [Galeopterus variegatus] | 0.0 |
| pfu_aug2.0_988.1_27962.t1 | gi|705657489|ref|XP_010129120.1| | PREDICTED: F-box/WD repeat-containing protein 7 [Chlamydotis macqueenii] | 0.0 |
| pfu_aug2.0_988.1_27962.t1 | gi|557007598|ref|XP_006005085.1| | PREDICTED: F-box/WD repeat-containing protein 7 isoform X6 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_988.1_27962.t1 | gi|507543874|ref|XP_004655920.1| | PREDICTED: F-box/WD repeat-containing protein 7 isoform X1 [Jaculus jaculus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_988.1_27962.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_988.1_27962.t1 atgctttcgacaaaaagccttgagaaaattgcggaaggtattgaaagtaaatgggtggatgtcgctaatgcattgaaagt cgacaaggaccaaatactagagatacaggatcgttttgaaaacaaacgccactgcgccatgcgcatgctggacgaatgga gattttctagcaaggcagttgaaagaggaatgagtattactgaggacttaatgtcagcactccgtacagctggatgcgac ccttctaccattaaacgggtagagggtttgatgcctaaaacaggccgacgttcccgatgtgaatctctagacgtgtccat aggatcccctaaaccttcaactagctcccacctgaccccaacaaactcaaggtcactgaggtcacgctgtattgagacac ctgatactgcatgcgacacagagagtaaagaaaatgagaggtcaaggtcaaggacagcaaggtctaggtcaaggtcaata gagcaggcagagagatgtgtgtctgtggacagggatgatacatttgatgaggatgagagtgaggtggcatcccctgcctc atttcaacaggagctgtcggaggatacagatgacagccctatagattctgccccgccctctcctgctaccccaggactga ggagtcagtcagggcttcatagtcatacatatagatcaaggatccctgtacctgtatctggtaaacaatggatgaaaaga aagagcagttgtgacttaggattaatgccatggaaacgtccttgtagaatcaatttttgtgatagtacttttgggaatct gaagaatacaaataggattcacaatctgactgtaggacccagacagaggatcccgtccaaagaaaacccccctcctaaac tctcagatttcctagaaatttttcagggatggagtaatgcggagagattaatggcgcttgatgaacttatacaagtctgt gagcccactcaggtgcgacatctgatgcaggtcatcgaaccacaatttcaacgagatttcatttcactgttgccaaaaga gcttgccttgtatgtcttatctttcttggagcctcgttcgttacttcgagcggcccagacgtgtcgttactggcgtgtct tggcggaggacaacttactgtggagagagaagtgtcgcgaggaagctattgacgagaacctggtttacggctcaaatcgt ctcaggaggcggagcacatcacgttgtccgtggaaatcgctctacatgaggcagcatcaaatcgaacaaaactggaggtc caatgaactcagacctcctaagttgctcaaaggtcacgatgaccatgttataacgtgtctggagttctgtggttctcgag tagtcagtggctctgatgacaatacacttaaagtatggtcagcaatcactggaaagtgtctgagaactttagttggacac acaggaggggtgtggtcatcacagatggccggccatattgtgatcagtggatctactgaccgcaccctcaaagtgtggaa tgctgatacaggacaatgtattcatacactatatggccatacatctacagtcaggtgtatgcatcttcatgaaaatgtgt gtgtccagtatgacggccggagagtggtcagtggggcgtatgattacatggtcaaggtgtgggaccctgagactgagacc tgtatacatacactacaaggacatactaacagggtctactcactacagtttgatggagtacacattgtgagtgggtccct ggacacatctatcagagtgtgggatgtagagtctggtaactgtcttcacacactgattggtcatcagtcactgaccagtg gtctggagctcaaggacaatattctagtctcaggaaatgctgactcaacggtcaaggtgtgggatatcactacaggccaa tgcctacaaactctacaagaccagataacagtgctttgtagtgctagtcaagtccaggaaatagccagatccacaatatt tgctcatatgcaacagttactcatgataactgagaatgcctacataaatccagatttgtcacctctcttcctcaaagaaa tgaaaagagaatatggacagaaatag |
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Protein
| Protein ID | pfu_aug2.0_988.1_27962.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_988.1_27962.t1 MLSTKSLEKIAEGIESKWVDVANALKVDKDQILEIQDRFENKRHCAMRMLDEWRFSSKAVERGMSITEDLMSALRTAGCD PSTIKRVEGLMPKTGRRSRCESLDVSIGSPKPSTSSHLTPTNSRSLRSRCIETPDTACDTESKENERSRSRTARSRSRSI EQAERCVSVDRDDTFDEDESEVASPASFQQELSEDTDDSPIDSAPPSPATPGLRSQSGLHSHTYRSRIPVPVSGKQWMKR KSSCDLGLMPWKRPCRINFCDSTFGNLKNTNRIHNLTVGPRQRIPSKENPPPKLSDFLEIFQGWSNAERLMALDELIQVC EPTQVRHLMQVIEPQFQRDFISLLPKELALYVLSFLEPRSLLRAAQTCRYWRVLAEDNLLWREKCREEAIDENLVYGSNR LRRRSTSRCPWKSLYMRQHQIEQNWRSNELRPPKLLKGHDDHVITCLEFCGSRVVSGSDDNTLKVWSAITGKCLRTLVGH TGGVWSSQMAGHIVISGSTDRTLKVWNADTGQCIHTLYGHTSTVRCMHLHENVCVQYDGRRVVSGAYDYMVKVWDPETET CIHTLQGHTNRVYSLQFDGVHIVSGSLDTSIRVWDVESGNCLHTLIGHQSLTSGLELKDNILVSGNADSTVKVWDITTGQ CLQTLQDQITVLCSASQVQEIARSTIFAHMQQLLMITENAYINPDLSPLFLKEMKREYGQK |
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