Gene
| Gene Model ID | pfu_aug2.0_99.1_30194 |
|---|---|
| Locus | scaffold99.1 : 29446 ... 30823 : + |
| To GenomeBrowser | scaffold99.1:29446..30823 |
| Genes list of scaffold | scaffold99.1 |
| Synonym | pfu_aug1.0_10407.1_17623 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_99.1_30194.t1 | 1 | 1 | Neur_chan_LBD | 34 | 228 | 7.0e-39 | 133.2 | 1.3004e-42 | 9.7e-39 | 132.7 |
| pfu_aug2.0_99.1_30194.t1 | 2 | 1 | Neur_chan_memb | 236 | 321 | 2.9e-12 | 46.9 | 3.9e-16 | 2.9e-12 | 46.9 |
| pfu_aug2.0_99.1_30194.t1 | 2 | 2 | Neur_chan_memb | 383 | 411 | 2.9e-12 | 46.9 | 0.012 | 92.0 | 2.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_99.1_30194.t1 | gi|617601047|ref|XP_007522809.1| | PREDICTED: neuronal acetylcholine receptor subunit alpha-6, partial [Erinaceus europaeus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_99.1_30194.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_99.1_30194.t1 atgaagagattgtgtgtcgttgtcctattcctttcctgtctaaaggtgaccctttctcagaccaatagcgattacgaggg tattatgacggagattttcacaaccaacggctataacaagaaaattttaccgaaagcaactcctaacaatccagttgaga ttgacctaagctttgtgcttcttggcatcaatgaaatagatgaattagcagagaaaatgaccacgactgcatatattgtg atatcctggaccgaccctggattagaatgggatcctgctgctcatggtgacaccgacaacatatatgtcccacaggacga tatttggaaaccggatattttcttgcagaatggattcactaaatttaaagaacttggtggatctttctattatattccgg ttgaattcgaaggaagaccaacatggatgccctttgaagtgtttgagagtaggtgttcccttgatacgagttattatccc tttgatgaacaaaggtgctccatcgcttttgtcgtatggagtcactccgtggaagaggttgaaataacgaaaagtaccta tggaataaggtatagtccagaattcaaagcaaacagcgtatgggacatcctatcagtatctagtgctatcagcagagaaa ctagagcgtcgaaattaacattcacgtttcttctgaagcgtaagtctctctactatgtggttaacatcatacttcccgtg gtatttttgggcctcctgaatgggctcgtgtttatcattccagcggattcaggcgaaaagacaggatactcagtcacagt tttcctgtcccttgttgtatttttgacaatcataagtacaattctaccggttaactcagagacggtttccttgttcggta tctttctgttcctccaagtcattattggagtgatggtacttatcgttacgaccatgcaattacgcctaaatgcaagatct accttgcatcaagttgatggcattttcctgaaagtagcaaaactaggaaagaatacctgctgttgtcagcgaaggaagaa tagaaggattagtccaagcaataaaatacatatcgttgagtgtgagttggggaatgatgagaaggaatcacctcgtactg actacacgccggcagatgatgcttacttgtggcgtgatgtagtcacaggaatcgatgtcataggattctggtgttttgtt attgcttactctgttgtgacggcttcaatgttctcttttctcgtaacatag |
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Protein
| Protein ID | pfu_aug2.0_99.1_30194.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_99.1_30194.t1 MKRLCVVVLFLSCLKVTLSQTNSDYEGIMTEIFTTNGYNKKILPKATPNNPVEIDLSFVLLGINEIDELAEKMTTTAYIV ISWTDPGLEWDPAAHGDTDNIYVPQDDIWKPDIFLQNGFTKFKELGGSFYYIPVEFEGRPTWMPFEVFESRCSLDTSYYP FDEQRCSIAFVVWSHSVEEVEITKSTYGIRYSPEFKANSVWDILSVSSAISRETRASKLTFTFLLKRKSLYYVVNIILPV VFLGLLNGLVFIIPADSGEKTGYSVTVFLSLVVFLTIISTILPVNSETVSLFGIFLFLQVIIGVMVLIVTTMQLRLNARS TLHQVDGIFLKVAKLGKNTCCCQRRKNRRISPSNKIHIVECELGNDEKESPRTDYTPADDAYLWRDVVTGIDVIGFWCFV IAYSVVTASMFSFLVT |
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