Gene
| Gene Model ID | pfu_aug2.0_992.1_08069 |
|---|---|
| Locus | scaffold992.1 : 106461 ... 109515 : - |
| To GenomeBrowser | scaffold992.1:106461..109515 |
| Genes list of scaffold | scaffold992.1 |
| Synonym | pfu_aug1.0_595.1_65534 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| cone-rod homeobox | GO:0005634 GO:0009952 GO:0042706 GO:0045872 GO:0045944 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_992.1_08069.t1 | 2 | 1 | Homeobox | 13 | 69 | 2.0e-22 | 78.5 | 7.7e-26 | 5.7e-22 | 77.0 |
| pfu_aug2.0_992.1_08069.t1 | 2 | 1 | TF_Otx | 91 | 105 | 5.2e-10 | 39.3 | 0.91 | 6800.0 | -2.7 |
| pfu_aug2.0_992.1_08069.t1 | 2 | 2 | TF_Otx | 120 | 174 | 5.2e-10 | 39.3 | 7.1e-14 | 5.2e-10 | 39.3 |
| pfu_aug2.0_992.1_08069.t1 | 2 | 2 | Homeobox | 162 | 191 | 2.0e-22 | 78.5 | 0.51 | 3800.0 | -2.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_992.1_08069.t1 | gi|676479069|ref|XP_009061628.1| | hypothetical protein LOTGIDRAFT_194184 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_992.1_08069.t1 | gi|148226797|ref|NP_001081916.1| | homeobox protein otx5-B [Xenopus laevis] | 0.0 |
| pfu_aug2.0_992.1_08069.t1 | gi|82248224|sp|Q9PVM0.1|OTX5A_XENLA | Homeobox protein otx5-A [Xenopus laevis] | 0.0 |
| pfu_aug2.0_992.1_08069.t1 | gi|742213013|ref|XP_010896957.1| | PREDICTED: cone-rod homeobox protein [Esox lucius] | 0.0 |
| pfu_aug2.0_992.1_08069.t1 | gi|62858983|ref|NP_001016021.1| | homeobox protein otx5 [Xenopus (Silurana) tropicalis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_992.1_08069.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_992.1_08069.t1 atgtatctatctacagccaacaacccccgcaaacagaggagggagcgtacaaccttcacccgcgcccagctggacgtact ggagtccctcttccagaaaacacgctaccccgacatcttcatgagggaggaagtggcactcaaaatcaatctacctgaat ccagagtacaggtatggttcaagaatagaagagctaagtgcagacagcaacagaaagctcaggacggtaaatccaaacct ccaacaccaaagaaggccaaatcacctccccctccttcaacatcacccgtagactgcaaaccacccgccttcagtaacgc catgacaaatggtcccatgaacactcagtcaatatggagtccggcagccattcctcctgtcaacgacattctaaattcca atagctgtatgcagcgtggtggttatcccatgccaaacagtcacagcgccgcgtactctcaacaaccatacggtcattcc agttactatggtaacatggactatttgaatcacatgcagcttccagtggtctcgaatcaaatgggacagtctgtaaacgg caaccaagtgtcttatggcgccatgggggcacctcaaatttcccgcggaaaccactcagattgtctcgaatataaagaca catcatcatggcctaaattccaagttttgtga |
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Protein
| Protein ID | pfu_aug2.0_992.1_08069.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_992.1_08069.t1 MYLSTANNPRKQRRERTTFTRAQLDVLESLFQKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQKAQDGKSKP PTPKKAKSPPPPSTSPVDCKPPAFSNAMTNGPMNTQSIWSPAAIPPVNDILNSNSCMQRGGYPMPNSHSAAYSQQPYGHS SYYGNMDYLNHMQLPVVSNQMGQSVNGNQVSYGAMGAPQISRGNHSDCLEYKDTSSWPKFQVL |
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