Gene
| Gene Model ID | pfu_aug2.0_996.1_21326 |
|---|---|
| Locus | scaffold996.1 : 43396 ... 70218 : + |
| To GenomeBrowser | scaffold996.1:43396..70218 |
| Genes list of scaffold | scaffold996.1 |
| Synonym | pfu_aug1.0_994.1_43874 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| e3 ubiquitin-protein ligase smurf2-like | GO:0004842 GO:0016567 GO:0016874 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_996.1_21326.t1 | 1 | 1 | C2 | 6 | 85 | 4.6e-14 | 52.0 | 2.1e-17 | 1.0e-13 | 50.9 |
| pfu_aug2.0_996.1_21326.t1 | 3 | 1 | WW | 153 | 182 | 5.3e-28 | 96.5 | 2.5e-13 | 1.2e-09 | 37.7 |
| pfu_aug2.0_996.1_21326.t1 | 3 | 2 | WW | 254 | 283 | 5.3e-28 | 96.5 | 2.2e-10 | 1.1e-06 | 28.3 |
| pfu_aug2.0_996.1_21326.t1 | 3 | 3 | WW | 302 | 331 | 5.3e-28 | 96.5 | 5.8e-13 | 2.9e-09 | 36.6 |
| pfu_aug2.0_996.1_21326.t1 | 1 | 1 | HECT | 441 | 707 | 0.0 | 261.9 | 0.0 | 0.0 | 261.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_996.1_21326.t1 | gi|524895749|ref|XP_005104356.1| | PREDICTED: E3 ubiquitin-protein ligase SMURF2-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_996.1_21326.t1 | gi|602650028|ref|XP_007431412.1| | PREDICTED: E3 ubiquitin-protein ligase SMURF2 [Python bivittatus] | 0.0 |
| pfu_aug2.0_996.1_21326.t1 | gi|551497848|ref|XP_005800478.1| | PREDICTED: E3 ubiquitin-protein ligase SMURF2-like isoform X2 [Xiphophorus maculatus] | 0.0 |
| pfu_aug2.0_996.1_21326.t1 | gi|551497846|ref|XP_005800477.1| | PREDICTED: E3 ubiquitin-protein ligase SMURF2-like isoform X1 [Xiphophorus maculatus] | 0.0 |
| pfu_aug2.0_996.1_21326.t1 | gi|551521852|ref|XP_005812415.1| | PREDICTED: E3 ubiquitin-protein ligase SMURF2-like [Xiphophorus maculatus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_996.1_21326.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_996.1_21326.t1 atggaatcatggctgcaagttctatgtgccaagaacttagccaagaaggatttctttcgtttgccggatccgtttgccaa gatcagtgttgatggctctggacaatgtcattccactgacacaagtaaaaatactctagatccgaaatggaaccaacatt atgacctatacatcggtagtaaggactcgataactataagtgtatggaatcacaagaagatccacaagaagcagggagct ggcttcctaggctgtgtcaggatcatgtcaaatgccatacaacagctcaaagacactggatttcagcgcctggatttaca aagaaacaactcggatgacaacgacaatgtccggggacagatcgtcatcagcctcatctcgcgggaccgaggggggtcgg gatcaggtccagtcaacactgatgccccagcatcgatccctagcgatcctaacgagctaccggagggatgggaggaaaga cggacggccagcggtcgtgtacattatgttaaccatataacacggtcaacacaatgggagagacctacaaggccggcctc agaatgcatcagaaatagtcagtctagtaacagtattcagggcggacagtcagcgggcaataatcggactaaccgggcca gtaataataacaacaatgagagtgaccgggagggcacaaataacccagccctgccccgccgacggtcaacccgacacaga aattacctcaatagatcacaactacacaatgcaatagaactacctgatggatatgagcagaggacgactcagcagggtca ggtttacttcttgcatacccgtacaggggtcagtacgtggcacgaccccagggtccccagggatttgtcgagcacggagg tccaggatgaagaattaggcactttaccagcgggctgggaagtgcgacacacgggaaatggacgagtatattttgttgac cacaataaccgtactacacagttcacagatcctcgactgtctgcaaacatccatctgatccagacaagaccacctcctgc atatgctccgaggagcgatgacaaagagaatgattcccctgtgccaaaatacaaaagagatcttgtacagaaaatgaaga tactgaagcaggagctccagagtttacagccgcaaggtggtcattgtcgaatggaagtgtccagagaagaaattttcgag gactcgtatcgacaagtaatgaaattacgagccaaagacttgaggaagcgcttgatggtcaagtttcgaggggaggaggg attggactatggaggagtggccaggttgagggagtggttgtaccttttatctcatgagatgctgaatccatactatgggc tgtttcagtatgccagggatgatatttatactctacaaatcaacccagactctggtgtcaatcctgagcacttgtcatac tttcactttgttgggaggattataggtcttgccatatttcacggtcattacctggatggtggttttaccatgccatttta taagcagctacttagcaaaccggtgaccttaggtgaccttgaggatgttgaccctgagcttcaccgtagtctggtctggt tactggacaataatatagaatcggtgctggaccatactttctctgttgaacataattcatttggacaagtccaagaatat gaactgaagcctggaggaaaattaacgaaagtcactgaggacaataagtctgaatatgttaggttatatgtacaatggag gtttatgaggggtatagaggctcagttcttagctcttcagaaaggcttcaatgaaatcattcctcagcacttactcaaac cttttgatgaaagggagttagagcttatgatagggggtttaggtaaaatagacttagaagattggaaatctcacacacgg ttaaagcactgtacaccagacagtaatatagtcaagtggttttggcgagcggtagatacgttcgacgatgagatgagggc gagactgctacagtttgttactggaagctcacgtgtcccactccagggattcaaggctctacaaggtacttatagtagtg tagtacgctgagaactactgacttgtgtacaaacttgtgtacttgtgtatgaatttaggatagtcctctcagagtaa |
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Protein
| Protein ID | pfu_aug2.0_996.1_21326.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_996.1_21326.t1 MESWLQVLCAKNLAKKDFFRLPDPFAKISVDGSGQCHSTDTSKNTLDPKWNQHYDLYIGSKDSITISVWNHKKIHKKQGA GFLGCVRIMSNAIQQLKDTGFQRLDLQRNNSDDNDNVRGQIVISLISRDRGGSGSGPVNTDAPASIPSDPNELPEGWEER RTASGRVHYVNHITRSTQWERPTRPASECIRNSQSSNSIQGGQSAGNNRTNRASNNNNNESDREGTNNPALPRRRSTRHR NYLNRSQLHNAIELPDGYEQRTTQQGQVYFLHTRTGVSTWHDPRVPRDLSSTEVQDEELGTLPAGWEVRHTGNGRVYFVD HNNRTTQFTDPRLSANIHLIQTRPPPAYAPRSDDKENDSPVPKYKRDLVQKMKILKQELQSLQPQGGHCRMEVSREEIFE DSYRQVMKLRAKDLRKRLMVKFRGEEGLDYGGVARLREWLYLLSHEMLNPYYGLFQYARDDIYTLQINPDSGVNPEHLSY FHFVGRIIGLAIFHGHYLDGGFTMPFYKQLLSKPVTLGDLEDVDPELHRSLVWLLDNNIESVLDHTFSVEHNSFGQVQEY ELKPGGKLTKVTEDNKSEYVRLYVQWRFMRGIEAQFLALQKGFNEIIPQHLLKPFDERELELMIGGLGKIDLEDWKSHTR LKHCTPDSNIVKWFWRAVDTFDDEMRARLLQFVTGSSRVPLQGFKALQGTYSSVVRXELLTCVQTCVLVYEFRIVLSE |
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