Gene
| Gene Model ID | pfu_aug2.0_996.1_21327 |
|---|---|
| Locus | scaffold996.1 : 72115 ... 74335 : - |
| To GenomeBrowser | scaffold996.1:72115..74335 |
| Genes list of scaffold | scaffold996.1 |
| Synonym | pfu_aug1.0_994.1_43875 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_996.1_21327.t1 | 2 | 1 | THUMP | 117 | 139 | 8.7e-13 | 48.3 | 0.082 | 1200.0 | -0.8 |
| pfu_aug2.0_996.1_21327.t1 | 2 | 2 | THUMP | 181 | 284 | 8.7e-13 | 48.3 | 2.1e-16 | 3.2e-12 | 46.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_996.1_21327.t1 | gi|512988024|ref|XP_004855934.1| | 0.0 | |
| pfu_aug2.0_996.1_21327.t1 | gi|21704176|ref|NP_663560.1| | THUMP domain-containing protein 1 [Mus musculus] | 0.0 |
| pfu_aug2.0_996.1_21327.t1 | gi|512906295|ref|XP_004900823.1| | 0.0 | |
| pfu_aug2.0_996.1_21327.t1 | gi|524920522|ref|XP_005064542.1| | PREDICTED: THUMP domain-containing protein 1 [Mesocricetus auratus] | 0.0 |
| pfu_aug2.0_996.1_21327.t1 | gi|395835895|ref|XP_003790906.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_996.1_21327.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_996.1_21327.t1 atgagtgaaagaagaggcaaaaagcgcccaaagtcatactacataaagtgtgctaaaaaagccaagccaggtggtggagg gcggttgcaagcaggaatgaaggggttccttgtcacttgtaacaaacatgagaaagaagctgttcgggaaatgtataact tacttaatgagtatgcggacgttctttatggtagagagaagttaaaatggaggagtgatggtaaggaggaagagaaagga gaggattgtgatcaagtcagtacagaggtgaaagagaagaaagaggaagattgtagtcaggttgatacagtggtacaggg taagaaaggtgaagagtgtggctctgatgaagaagatagtgaagaggaagacatagaaaaagccatgaataaagaaatca aagatatcaaagactcacagaaaacagagaggaggttccaaaataccaacaccaaagtctctaactgtatcttcatccgt accaccttggaagatccttgtgctttggtgcatcacatcttcacagacttggcatctagtaagcagcagaaaactcgttc agcaataaggatccttcctattagcgactcttgtaaggcttttgatgaagatataaagaagttggcagagaagttattcc gttcttactttgagacagagtatggatgtggattagcgttcacaattatgttcaagacacgtaataatagtggtataggc agagactctgtaataccgatgctgggtcagataatccgagatctcaatcctctacacagaatcaatcacattaatccaga ctatacggtccttgtagaaattgtaggcaatatctgctgtatgagtgtagtcaaggacttcttcaaattcagaaagtata atttacatgaagttgtgaagacaagaaccgagggtgtgccgcaccatttaaacacaatggatcatagagaaggtgaaatg aactcaaagaagtcaactagtgagagggtccaaggaactgtgcctgcacaagatgatcatgatgatagagaaagaagaga cgaaagtgacataaaagatgactgtgagaaagatgtgaaaactgaaaatggtgacagaattacacttgagaatgtggata aagcagaaattaagagagagcttgatgaggaatgtggtgtgaatgggaaaaaagattgtgacattggaaaagcgatagtc aaagaagaatcctcttga |
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Protein
| Protein ID | pfu_aug2.0_996.1_21327.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_996.1_21327.t1 MSERRGKKRPKSYYIKCAKKAKPGGGGRLQAGMKGFLVTCNKHEKEAVREMYNLLNEYADVLYGREKLKWRSDGKEEEKG EDCDQVSTEVKEKKEEDCSQVDTVVQGKKGEECGSDEEDSEEEDIEKAMNKEIKDIKDSQKTERRFQNTNTKVSNCIFIR TTLEDPCALVHHIFTDLASSKQQKTRSAIRILPISDSCKAFDEDIKKLAEKLFRSYFETEYGCGLAFTIMFKTRNNSGIG RDSVIPMLGQIIRDLNPLHRINHINPDYTVLVEIVGNICCMSVVKDFFKFRKYNLHEVVKTRTEGVPHHLNTMDHREGEM NSKKSTSERVQGTVPAQDDHDDRERRDESDIKDDCEKDVKTENGDRITLENVDKAEIKRELDEECGVNGKKDCDIGKAIV KEESS |
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