Gene
| Gene Model ID | pfu_aug2.0_996.1_21328 |
|---|---|
| Locus | scaffold996.1 : 76556 ... 93740 : + |
| To GenomeBrowser | scaffold996.1:76556..93740 |
| Genes list of scaffold | scaffold996.1 |
| Synonym | pfu_aug1.0_47.1_50586 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_996.1_21328.t1 | 1 | 1 | RRM_1 | 266 | 327 | 4.1e-11 | 42.3 | 1.8e-14 | 6.7e-11 | 41.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_996.1_21328.t1 | gi|524913986|ref|XP_005111814.1| | PREDICTED: polymerase delta-interacting protein 3-like isoform X1 [Aplysia californica] | 2.0e-31 |
| pfu_aug2.0_996.1_21328.t1 | gi|524913988|ref|XP_005111815.1| | PREDICTED: polymerase delta-interacting protein 3-like isoform X2 [Aplysia californica] | 2.0e-31 |
| pfu_aug2.0_996.1_21328.t1 | gi|676431247|ref|XP_009046188.1| | hypothetical protein LOTGIDRAFT_237836 [Lottia gigantea] | 6.0e-30 |
| pfu_aug2.0_996.1_21328.t1 | gi|72087247|ref|XP_787816.1| | PREDICTED: polymerase delta-interacting protein 3 [Strongylocentrotus purpuratus] | 6.0e-25 |
| pfu_aug2.0_996.1_21328.t1 | gi|585676679|ref|XP_006819007.1| | PREDICTED: polymerase delta-interacting protein 3-like [Saccoglossus kowalevskii] | 1.0e-22 |
Transcript
| Transcript ID | pfu_aug2.0_996.1_21328.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_996.1_21328.t1 atgtcacacgaacgatcaataacaatgcaggccaaaatacagcaacagatttccaaattacaagaacgattggtggcagt acaaaaatttggtgggaatgttagtggtttatcaaatgctgtgcaagtatccggaaataatctaacaataacacgaaaca taggagcctctaatcccgtacaacagaattcacatctcaccaaggtcatctcaaacataccagtccatacatcaacaccc ccagtgcccatggcagcccctaattatcctgtcatccagtacacggccgagtcacacagtccatatcaacaacctgtctc gtatcagtacagccagcctcccccacccctccccacacatcacgtccctcagcccacatactacatgggcacagagaaca catattatgatgacttagaggaggaggaggaggatgagctggaacttgaggatcccgaccctgtggggataaaaccctcc acatacctagtggagaaaacattgacagtaaagagacctcagctattgtctacaaaatctaacgttatctcgctaaaatc aacaggatcaaaaacgacaaagattcagcagcaagctttatcaatgacaagtgtggcaactaagcgtaaggcaccagtag ttcaaaataccggtccactgaagtttgccaaatcctctgtatccagtgattcaggagggggaggtggtaaacgccttaag gttattaagcaggaggaagacatggagacagattcagaagccaaggttgtagctaattcaccacttggcttccgagtgat catatccaatcttcatactgttgtctcacaggatgatataattgaattgtttggtgctgttggtccaatgaaaagagctc ggctggtaaaggctggcgtagcagaggttgtatatacacagaaaggggacgcacaaaaagccatacagaagtatcataac agagaattagatggtttaccgatgacagttaagatgtacacacctccggctccctcaccaaagaaaacaccagagaatat tctgggcaatgttaaagacgtagagggaccacttagactaggaaaagatgcaccaaagaagagttcagatttggacatgt ctgttctacacaaagtattgtttaaggcagggacgccctcggggtctaagccggtcacattcacggtcaaagtatag |
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Protein
| Protein ID | pfu_aug2.0_996.1_21328.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_996.1_21328.t1 MSHERSITMQAKIQQQISKLQERLVAVQKFGGNVSGLSNAVQVSGNNLTITRNIGASNPVQQNSHLTKVISNIPVHTSTP PVPMAAPNYPVIQYTAESHSPYQQPVSYQYSQPPPPLPTHHVPQPTYYMGTENTYYDDLEEEEEDELELEDPDPVGIKPS TYLVEKTLTVKRPQLLSTKSNVISLKSTGSKTTKIQQQALSMTSVATKRKAPVVQNTGPLKFAKSSVSSDSGGGGGKRLK VIKQEEDMETDSEAKVVANSPLGFRVIISNLHTVVSQDDIIELFGAVGPMKRARLVKAGVAEVVYTQKGDAQKAIQKYHN RELDGLPMTVKMYTPPAPSPKKTPENILGNVKDVEGPLRLGKDAPKKSSDLDMSVLHKVLFKAGTPSGSKPVTFTVKV |
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