Gene
| Gene Model ID | pfu_aug2.0_996.1_21332 |
|---|---|
| Locus | scaffold996.1 : 177666 ... 193705 : - |
| To GenomeBrowser | scaffold996.1:177666..193705 |
| Genes list of scaffold | scaffold996.1 |
| Synonym | pfu_aug1.0_47.1_50582 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| mediator of rna polymerase ii transcription subunit 27 isoform x1 | GO:0003713 GO:0005515 GO:0005654 GO:0005667 GO:0005730 GO:0005737 GO:0006357 GO:0006367 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_996.1_21332.t1 | 16 | 1 | zf-C2H2_4 | 796 | 818 | 3.3e-24 | 83.3 | 0.0059 | 8.7 | 6.9 |
| pfu_aug2.0_996.1_21332.t1 | 16 | 1 | zf-C2H2 | 796 | 818 | 6.1e-17 | 60.8 | 0.029 | 44.0 | 4.7 |
| pfu_aug2.0_996.1_21332.t1 | 16 | 2 | zf-C2H2_4 | 823 | 845 | 3.3e-24 | 83.3 | 0.00061 | 0.9 | 10.0 |
| pfu_aug2.0_996.1_21332.t1 | 16 | 2 | zf-C2H2 | 823 | 845 | 6.1e-17 | 60.8 | 0.033 | 49.0 | 4.5 |
| pfu_aug2.0_996.1_21332.t1 | 12 | 1 | zf-C2H2_6 | 823 | 832 | 1.0e-08 | 34.7 | 0.97 | 1400.0 | -0.7 |
| pfu_aug2.0_996.1_21332.t1 | 16 | 3 | zf-C2H2_4 | 852 | 874 | 3.3e-24 | 83.3 | 0.11 | 160.0 | 2.9 |
| pfu_aug2.0_996.1_21332.t1 | 16 | 3 | zf-C2H2 | 852 | 874 | 6.1e-17 | 60.8 | 0.29 | 430.0 | 1.5 |
| pfu_aug2.0_996.1_21332.t1 | 12 | 2 | zf-C2H2_6 | 852 | 862 | 1.0e-08 | 34.7 | 1.1 | 1600.0 | -0.8 |
| pfu_aug2.0_996.1_21332.t1 | 16 | 4 | zf-C2H2_4 | 894 | 915 | 3.3e-24 | 83.3 | 1.4e-06 | 0.0021 | 18.2 |
| pfu_aug2.0_996.1_21332.t1 | 16 | 4 | zf-C2H2 | 894 | 915 | 6.1e-17 | 60.8 | 0.00017 | 0.25 | 11.7 |
| pfu_aug2.0_996.1_21332.t1 | 12 | 3 | zf-C2H2_6 | 894 | 917 | 1.0e-08 | 34.7 | 1.1e-05 | 0.016 | 15.1 |
| pfu_aug2.0_996.1_21332.t1 | 16 | 5 | zf-C2H2_4 | 923 | 944 | 3.3e-24 | 83.3 | 0.00082 | 1.2 | 9.6 |
| pfu_aug2.0_996.1_21332.t1 | 16 | 5 | zf-C2H2 | 923 | 944 | 6.1e-17 | 60.8 | 0.0011 | 1.6 | 9.2 |
| pfu_aug2.0_996.1_21332.t1 | 12 | 4 | zf-C2H2_6 | 923 | 942 | 1.0e-08 | 34.7 | 0.0025 | 3.7 | 7.5 |
| pfu_aug2.0_996.1_21332.t1 | 16 | 6 | zf-C2H2 | 951 | 972 | 6.1e-17 | 60.8 | 0.025 | 36.0 | 4.9 |
| pfu_aug2.0_996.1_21332.t1 | 12 | 5 | zf-C2H2_6 | 951 | 968 | 1.0e-08 | 34.7 | 0.48 | 710.0 | 0.3 |
| pfu_aug2.0_996.1_21332.t1 | 16 | 6 | zf-C2H2_4 | 952 | 972 | 3.3e-24 | 83.3 | 0.013 | 19.0 | 5.8 |
| pfu_aug2.0_996.1_21332.t1 | 12 | 6 | zf-C2H2_6 | 976 | 997 | 1.0e-08 | 34.7 | 0.00024 | 0.35 | 10.8 |
| pfu_aug2.0_996.1_21332.t1 | 16 | 7 | zf-C2H2_4 | 977 | 998 | 3.3e-24 | 83.3 | 0.0012 | 1.7 | 9.1 |
| pfu_aug2.0_996.1_21332.t1 | 16 | 7 | zf-C2H2 | 977 | 997 | 6.1e-17 | 60.8 | 0.0044 | 6.5 | 7.3 |
| pfu_aug2.0_996.1_21332.t1 | 16 | 8 | zf-C2H2_4 | 1165 | 1186 | 3.3e-24 | 83.3 | 0.00036 | 0.53 | 10.7 |
| pfu_aug2.0_996.1_21332.t1 | 16 | 8 | zf-C2H2 | 1165 | 1186 | 6.1e-17 | 60.8 | 0.00032 | 0.47 | 10.9 |
| pfu_aug2.0_996.1_21332.t1 | 12 | 7 | zf-C2H2_6 | 1166 | 1188 | 1.0e-08 | 34.7 | 0.00034 | 0.51 | 10.3 |
| pfu_aug2.0_996.1_21332.t1 | 16 | 9 | zf-C2H2_4 | 1192 | 1215 | 3.3e-24 | 83.3 | 0.0053 | 7.8 | 7.0 |
| pfu_aug2.0_996.1_21332.t1 | 16 | 9 | zf-C2H2 | 1192 | 1215 | 6.1e-17 | 60.8 | 4.7e-06 | 0.0069 | 16.6 |
| pfu_aug2.0_996.1_21332.t1 | 16 | 10 | zf-C2H2 | 1446 | 1467 | 6.1e-17 | 60.8 | 0.01 | 15.0 | 6.1 |
| pfu_aug2.0_996.1_21332.t1 | 16 | 10 | zf-C2H2_4 | 1447 | 1467 | 3.3e-24 | 83.3 | 0.0029 | 4.4 | 7.8 |
| pfu_aug2.0_996.1_21332.t1 | 12 | 8 | zf-C2H2_6 | 1447 | 1467 | 1.0e-08 | 34.7 | 1.4e-05 | 0.021 | 14.7 |
| pfu_aug2.0_996.1_21332.t1 | 16 | 11 | zf-C2H2_4 | 1473 | 1494 | 3.3e-24 | 83.3 | 5.5e-06 | 0.0082 | 16.4 |
| pfu_aug2.0_996.1_21332.t1 | 16 | 11 | zf-C2H2 | 1473 | 1493 | 6.1e-17 | 60.8 | 0.00054 | 0.79 | 10.1 |
| pfu_aug2.0_996.1_21332.t1 | 12 | 9 | zf-C2H2_6 | 1473 | 1487 | 1.0e-08 | 34.7 | 0.02 | 30.0 | 4.6 |
| pfu_aug2.0_996.1_21332.t1 | 16 | 12 | zf-C2H2 | 1501 | 1523 | 6.1e-17 | 60.8 | 0.00027 | 0.4 | 11.1 |
| pfu_aug2.0_996.1_21332.t1 | 16 | 12 | zf-C2H2_4 | 1503 | 1523 | 3.3e-24 | 83.3 | 0.00031 | 0.46 | 10.9 |
| pfu_aug2.0_996.1_21332.t1 | 16 | 13 | zf-C2H2_4 | 1530 | 1555 | 3.3e-24 | 83.3 | 0.00021 | 0.32 | 11.4 |
| pfu_aug2.0_996.1_21332.t1 | 16 | 13 | zf-C2H2 | 1530 | 1555 | 6.1e-17 | 60.8 | 0.00022 | 0.33 | 11.3 |
| pfu_aug2.0_996.1_21332.t1 | 12 | 10 | zf-C2H2_6 | 1568 | 1579 | 1.0e-08 | 34.7 | 0.0038 | 5.6 | 7.0 |
| pfu_aug2.0_996.1_21332.t1 | 16 | 14 | zf-C2H2_4 | 1569 | 1591 | 3.3e-24 | 83.3 | 0.00094 | 1.4 | 9.4 |
| pfu_aug2.0_996.1_21332.t1 | 16 | 14 | zf-C2H2 | 1569 | 1591 | 6.1e-17 | 60.8 | 2.9e-06 | 0.0043 | 17.3 |
| pfu_aug2.0_996.1_21332.t1 | 16 | 15 | zf-C2H2 | 1599 | 1622 | 6.1e-17 | 60.8 | 0.2 | 300.0 | 2.0 |
| pfu_aug2.0_996.1_21332.t1 | 12 | 11 | zf-C2H2_6 | 1599 | 1609 | 1.0e-08 | 34.7 | 0.15 | 230.0 | 1.9 |
| pfu_aug2.0_996.1_21332.t1 | 16 | 15 | zf-C2H2_4 | 1600 | 1622 | 3.3e-24 | 83.3 | 0.0045 | 6.7 | 7.2 |
| pfu_aug2.0_996.1_21332.t1 | 16 | 16 | zf-C2H2 | 1636 | 1658 | 6.1e-17 | 60.8 | 0.00023 | 0.35 | 11.3 |
| pfu_aug2.0_996.1_21332.t1 | 16 | 16 | zf-C2H2_4 | 1637 | 1658 | 3.3e-24 | 83.3 | 0.00015 | 0.22 | 11.9 |
| pfu_aug2.0_996.1_21332.t1 | 12 | 12 | zf-C2H2_6 | 1637 | 1646 | 1.0e-08 | 34.7 | 0.02 | 29.0 | 4.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_996.1_21332.t1 | gi|697829528|ref|XP_009635140.1| | PREDICTED: mediator of RNA polymerase II transcription subunit 27, partial [Egretta garzetta] | 4.0e-27 |
| pfu_aug2.0_996.1_21332.t1 | gi|591372805|ref|XP_007061103.1| | PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Chelonia mydas] | 5.0e-27 |
| pfu_aug2.0_996.1_21332.t1 | gi|530427261|ref|XP_005272293.1| | PREDICTED: mediator of RNA polymerase II transcription subunit 27 isoform X1 [Homo sapiens] | 9.0e-27 |
Transcript
| Transcript ID | pfu_aug2.0_996.1_21332.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_996.1_21332.t1 atgaagagcataaatggaaaaagtggaaaaaataaactaaaaggaaaaactggcgagaaaagaaaacaacaaaatcaaaa tatcagtggtgaaagtgttgcaaaagttcaggtgactacaaatcaaacggagatacccaggttatcgaccatgaattcgg acattacatactcgctaccaccacctcctcaagggtacggcattccacaccaatcaacgcctattgttcagggagcatac ggacagtacgcttcacctaccttgccaggcgatgttaactcatgtctggattctatatgtagaaaactcgattcgatgac tgaccaattgcagagtaatacggaacagttacgtaaattagacttaatggaatcaagattaagtaaccttgaatcaacca cagtgaacataaaatcagatatggaaggaatgaagaaaggaatgggtgagatggagaaatcaatgaatttcatgaataaa cagtttgaaaaaaaccaagaagaaatttctgaactcaggaaatatgtggacattacgtcaagtgatactacaaaactgaa agaatccgagaacctgtcaatgagagacaattcagtttttacgggaattgtggaaccgcagcgtgaggttgatatgaata cagggcgcccaattgcagaggacactgagtccgttttgagggatttccttgacgctaggatggacatccgggacatagca ttccatcgtgtacataggatggggaagccgatagcgggtaaatcccgcccaattgtggctaaattcctactcttcaagga ccgggaaaaagttagaaaacttgcaaaagagaagctctctggtaccgcttttggtataaacgaacagtatcccagagnca gtgaagtggacctgctccaagccggtattgaaccgaataccagagcgttaccgaagaagctgtctccatcagtacagtca acacacccaccaaacctaaacagtgctggacttctcaaccttgatccctcaacagacaaaactgccctaagttctcaact ccataatgcccataaatggactaataaggttcacaagtttgcagactttgctactggcactcttaataataacttattaa aacggagtcagcagatctcgtcccagccttccacaaagcgaccacgtaaacaaccacccatcattcacagcttccctgcc aatcaggtggaacagttaattttgaacttggacagaatgtggccagacatgtctattgtccctaccagaccaatgggtgg atcaactgtacttcagataactctaacaaagacattaagaggtgttatagtgttacgaggtctcctaatggagtatgtat caatcaaggctttcaatgaagattttgttaatgaagatggcaaagtcttccagcaaattgtcggaattccaatggggacc aattgtgccccactccttgtcgacattttcctttatactcgtacgaagctgaattcattcaatctttggtctctggggaa aagatacttagcttctgacatcaacttcacttacagatacatagacgatgtgttgtccatcaataatccgaaattcgcgg attacctcagcagtatctatccttcggaacttgaagtcaaagaaactacagaggcaaatatttcagcatcctatttggac ataatgttgtcctacctcactgatgggcacatgaacacctcactctatgacaaacgtgacgacttcaatttcagcatgac aaactttccttttctgagtagcaacatcccttcatcgcctgtttatggcgtgttcatatctcagttgatatgctatgcca gagcaaatgtatacgatggtactgtggagcaggtttcccctcaaggtgaggtgcactataacataatgagatgggacaag cctagtgagtctaagaatcccaagcaacctgccataaaacagacacctccatctgtcccctccagtggccaaagtggaac agtccaattgcagaaacagattcctcaagctgacccacctcaaagtgagaatggaatagtcccagttaagttacactcct tgaaccctggtcaaagtggggccttccctatacagaacccttccatagatacaatcccaacaccagtgacttcatcttct gtgctaacacagttgagtcagcaaacagtaccacaacctcagttaagtcagataccggccaccaatgtaccaaacttgag catagctatgccttctaatcaaagcataccagtggttcctgctccgccacctcctgttttagataagattcagatacttc agcagagtcttgcaagtgagagcaacattcatgtgaaggttgtaccaaacccaaagaatgcacaattcaaatgttttgtt tgtgcagagatattgccttcaaaagtcggattacagcagcatctgatggagcactcccaacgctggtacaaatgtaaata ctgtagcagacttttcttccgacaggttgactgtgataggcatgctgtagtccatgctaaaaggaagcaggagaaatgta agttctgtgatgtcagatatgtttcagtggtaggaaggaaccgacatatgaagaaccgacatccagaagaatggaagaaa atctgtcaggaaaccgaaaacctggagaagaaaggaatcaagtgtcaggtgtgtaacgcaactttcccgtctatcaataa gatgaaacgacacatgaggtatcataagaagagactcatcaacaccaggtgttatgtctgtaatgaggaatttcagacta ctgagcagttgatggagcatgttaaagtacaccctgcatctgtgttggtaacctgtgaaatgtgcaatgaaaagtttgac agtcatctcaagttacaccagcatcagtctgtatgtccaaaagcagtctattcctgtaatgaatgctgtcaagtctttgg ttcattagacgagcttgaaagacataaaattgaggaagggcatgaggaggaagatgaggaagaggaaggtgaggagggag tgatggaggaggagtctgaggacacaggatcactgcactctcttaaaatcagcagtgttgtgagctgtgcttctgactcg gcctttacggagagtgaagacgcacagacagttcctcctgataattatggtgagacaagtaaggacaatagcagtggcat ggcaagttttgtatgtggagaggcaccagggagtggtgtagaggcacctggattcattacaggcattaagacggagcctg aagattatgtagatgatagcctgttaatgactgatattaaaacagagccaggagaaagcagcatgacggagcaagacagt agcatgacaggaatggacactactcaagacagcagctttagtatgaatgagactgaccagtcaatggaatatgccgatga cattgaccttgtatccccataccagcagaagaaaaagtcttcattgaccagtgtatgctacttttgtggacaagtttttg tcaacagaaaaactttctcgactcatctgaaaagtcatatgcaaaatggaaaatttaagtgtctttactgtgattattca tacactaagcctgataatgtacacaggcacatgaaatgggtacatggaaaagtgaaagaagctaaaaaatcagaaaagag acctattttgccaaagccaaagggggtcaatgatgtttattttctcccagttgactctggtgtgactgtgccatctacga ttggcaatgtttggagtttaacaggaattacgtcgaatgctgcacctccaaatggcaataatgtaagcaaaaaatccatg aagctcaaagcatcagaatatttgccaaaaccttgggctaagagtcagatcaattttcatccaacacagacattagcatt tccatgcactcctgaacagattgtgagcagtgattcctctggtggtgttctaagctctggtagtactgctggtaataaca tttcatactcaacagtttcatttgtaccagaggcacctcttataagtgccacaagctcaacagctccgtttgtaccagag gtacgtcttgtaaatgctgctgagacaccccttgtaaatgctgctagcaaatcagtccaatatcaaactgtatcatttgt acctatttcagctccacctagcactgctttgtcatctagtgcgactgaatcaacatcatctacggcatcaaacaaaaagc cctctacatcagtcagtgctgcttcatcatccactaccacatctgtttccaaaccagatccatccgtatccaaatctgct cctgccactctttgtcactgtctgacatgtaacgccgactttaccagctttgacaaactccaggagcacatgaaggaaca tgaagataagcaggaatacccatgtcatttttgccaaaaacctttcccctcgttagaggcatgtcaaaagcatatgctct cagctaaggaagtttgccgctttggttgtgaatactgcggagatgtaatgccaacaagatttcacctctggaatcatagg aaaattcatgctaaggatggcagaaattattcttgttatgtagatggttgtacaaagagattcacatcacacagggtact caaaaaacacattgtttcattgcacgttaccaatgcaaatgtggattattttgattttagtacgtttcgttgtaaagaat gtggaaaattgttctcgctcaagtcagatcttgacttccatgctcggtctcacaaggaaaaaccgccattagttgagtgt aagacttgtggaaaattgatcagcagtgcagacaagcgatgtttgaagcgacatgaactgcgtcatcttaaacctgggga aatatttaaatgcgacagagaactctcatgtcatttatgtaaacaaacatttaattctgcattagggcttgatcaacatc ttcgaactgtgcatatagggaatttagtgggggcagactcgaagaaagatgtagttgttatcgattcagactcctctatt gatgactatggggaggaagataaagatgacgatgaaattgataagcttacaggaattattccccttgatccaaaagtaat gttacactga |
|
Protein
| Protein ID | pfu_aug2.0_996.1_21332.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_996.1_21332.t1 MKSINGKSGKNKLKGKTGEKRKQQNQNISGESVAKVQVTTNQTEIPRLSTMNSDITYSLPPPPQGYGIPHQSTPIVQGAY GQYASPTLPGDVNSCLDSICRKLDSMTDQLQSNTEQLRKLDLMESRLSNLESTTVNIKSDMEGMKKGMGEMEKSMNFMNK QFEKNQEEISELRKYVDITSSDTTKLKESENLSMRDNSVFTGIVEPQREVDMNTGRPIAEDTESVLRDFLDARMDIRDIA FHRVHRMGKPIAGKSRPIVAKFLLFKDREKVRKLAKEKLSGTAFGINEQYPRXSEVDLLQAGIEPNTRALPKKLSPSVQS THPPNLNSAGLLNLDPSTDKTALSSQLHNAHKWTNKVHKFADFATGTLNNNLLKRSQQISSQPSTKRPRKQPPIIHSFPA NQVEQLILNLDRMWPDMSIVPTRPMGGSTVLQITLTKTLRGVIVLRGLLMEYVSIKAFNEDFVNEDGKVFQQIVGIPMGT NCAPLLVDIFLYTRTKLNSFNLWSLGKRYLASDINFTYRYIDDVLSINNPKFADYLSSIYPSELEVKETTEANISASYLD IMLSYLTDGHMNTSLYDKRDDFNFSMTNFPFLSSNIPSSPVYGVFISQLICYARANVYDGTVEQVSPQGEVHYNIMRWDK PSESKNPKQPAIKQTPPSVPSSGQSGTVQLQKQIPQADPPQSENGIVPVKLHSLNPGQSGAFPIQNPSIDTIPTPVTSSS VLTQLSQQTVPQPQLSQIPATNVPNLSIAMPSNQSIPVVPAPPPPVLDKIQILQQSLASESNIHVKVVPNPKNAQFKCFV CAEILPSKVGLQQHLMEHSQRWYKCKYCSRLFFRQVDCDRHAVVHAKRKQEKCKFCDVRYVSVVGRNRHMKNRHPEEWKK ICQETENLEKKGIKCQVCNATFPSINKMKRHMRYHKKRLINTRCYVCNEEFQTTEQLMEHVKVHPASVLVTCEMCNEKFD SHLKLHQHQSVCPKAVYSCNECCQVFGSLDELERHKIEEGHEEEDEEEEGEEGVMEEESEDTGSLHSLKISSVVSCASDS AFTESEDAQTVPPDNYGETSKDNSSGMASFVCGEAPGSGVEAPGFITGIKTEPEDYVDDSLLMTDIKTEPGESSMTEQDS SMTGMDTTQDSSFSMNETDQSMEYADDIDLVSPYQQKKKSSLTSVCYFCGQVFVNRKTFSTHLKSHMQNGKFKCLYCDYS YTKPDNVHRHMKWVHGKVKEAKKSEKRPILPKPKGVNDVYFLPVDSGVTVPSTIGNVWSLTGITSNAAPPNGNNVSKKSM KLKASEYLPKPWAKSQINFHPTQTLAFPCTPEQIVSSDSSGGVLSSGSTAGNNISYSTVSFVPEAPLISATSSTAPFVPE VRLVNAAETPLVNAASKSVQYQTVSFVPISAPPSTALSSSATESTSSTASNKKPSTSVSAASSSTTTSVSKPDPSVSKSA PATLCHCLTCNADFTSFDKLQEHMKEHEDKQEYPCHFCQKPFPSLEACQKHMLSAKEVCRFGCEYCGDVMPTRFHLWNHR KIHAKDGRNYSCYVDGCTKRFTSHRVLKKHIVSLHVTNANVDYFDFSTFRCKECGKLFSLKSDLDFHARSHKEKPPLVEC KTCGKLISSADKRCLKRHELRHLKPGEIFKCDRELSCHLCKQTFNSALGLDQHLRTVHIGNLVGADSKKDVVVIDSDSSI DDYGEEDKDDDEIDKLTGIIPLDPKVMLH |
|