Gene
| Gene Model ID | pfu_aug2.0_996.1_21333 |
|---|---|
| Locus | scaffold996.1 : 194510 ... 205154 : + |
| To GenomeBrowser | scaffold996.1:194510..205154 |
| Genes list of scaffold | scaffold996.1 |
| Synonym | pfu_aug1.0_11332.1_46364 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| nuclear pore complex protein nup93 | GO:0005643 GO:0017056 GO:0031965 GO:0033036 GO:0034399 GO:0051292 GO:0071702 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_996.1_21333.t1 | 2 | 1 | Nic96 | 9 | 56 | 0.0 | 395.1 | 0.033 | 480.0 | -1.5 |
| pfu_aug2.0_996.1_21333.t1 | 2 | 2 | Nic96 | 95 | 472 | 0.0 | 395.1 | 0.0 | 0.0 | 394.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_996.1_21333.t1 | gi|260798390|ref|XP_002594183.1| | hypothetical protein BRAFLDRAFT_275527 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_996.1_21333.t1 | gi|488529663|ref|XP_004456613.1| | PREDICTED: nuclear pore complex protein Nup93 isoform X2 [Dasypus novemcinctus] | 0.0 |
| pfu_aug2.0_996.1_21333.t1 | gi|637362585|ref|XP_008120511.1| | PREDICTED: nuclear pore complex protein Nup93 [Anolis carolinensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_996.1_21333.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_996.1_21333.t1 atggatacagacggggaagactttgccgatctattacagcaggctgatcaactcgcggcagacgccgagacaggatcgga cctaccacgtgttacacgtaatctcaatcagatatatgagaccagtcaacgtcttgtctcaaaagttgctccaatcagtc aagattccacagatgttaaagcttcaatattgctgggtacaaaaggctacgatgttccaaagatctcacagaaactagag ggactgagtgctgccaagacttttgaacctttagaacctgtccgggatactgatatacagcatgtatgtgagctatggga aatggtgaagtccatgacagaggtccccctagtggccactgatagtataaaggaaacacgtctagatccccgtactcagg catcgtttattgtacaggccaaacagtatctggaacaaatgtattgcaaacacattcagaaaataatatatggaaaccta cagcaagctcagatgggcggtataccgggaacttttaactctgtacgcagctttctcaatgtacatcctcaacatctgaa aggtctcgaggatggtcttgttgatggacacccagtatgggctatgatttattactgtttgagatgtggggacgtagccg ccgcccagcaagttgtcagcagagctgcacataatttaggagattttcaagtgttccttaatgagtatgcatcagatgaa gatcacaggttaagtgctgggagtgagaagaagttaagtttacagtacagacggagtgtcaaaggtggaacggatccttt taaaaaggtgtgttactgtgtgataggtgggtgtgacccagacgaggatcaccctgaggtagcagacagtatagacgatt acttgtggattaagttatctcagatacagctccacccagagtccacacaccaagacccgttcacactacacaaactacaa aaacttctctttgaagattttggtgagagtcatttcagtggctaccagcagccgttcctgtattttgaagtgctcatcct tacggcacaatttgaggcagctatagaattcctatcccgtatcgacagactcatgtgtcatgcggtgcacgtagcgctgg cattctacgaacagaaactgttgttacttccccagaacagtcaagctcagctcttaacaaaagagccaagtgacataagt ccgttacggagattgaactttgtacgtctcatcacgatgtacacacggaagtttgaggctacggatgccagggaagcctt acaatacttctacttcctcagggacttgcacacatcacaaggtgaaaatctcttcaagtcatgtgtcagtgaattagtgc tagagaccagagagtttgagatgctcttgggtaaaatagacagagatggtacaagacat |
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Protein
| Protein ID | pfu_aug2.0_996.1_21333.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_996.1_21333.t1 MDTDGEDFADLLQQADQLAADAETGSDLPRVTRNLNQIYETSQRLVSKVAPISQDSTDVKASILLGTKGYDVPKISQKLE GLSAAKTFEPLEPVRDTDIQHVCELWEMVKSMTEVPLVATDSIKETRLDPRTQASFIVQAKQYLEQMYCKHIQKIIYGNL QQAQMGGIPGTFNSVRSFLNVHPQHLKGLEDGLVDGHPVWAMIYYCLRCGDVAAAQQVVSRAAHNLGDFQVFLNEYASDE DHRLSAGSEKKLSLQYRRSVKGGTDPFKKVCYCVIGGCDPDEDHPEVADSIDDYLWIKLSQIQLHPESTHQDPFTLHKLQ KLLFEDFGESHFSGYQQPFLYFEVLILTAQFEAAIEFLSRIDRLMCHAVHVALAFYEQKLLLLPQNSQAQLLTKEPSDIS PLRRLNFVRLITMYTRKFEATDAREALQYFYFLRDLHTSQGENLFKSCVSELVLETREFEMLLGKIDRDGTRH |
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