Genome browser

	Gene model	Gene name	Description	Blast top hit		Blast2GO annotation	Scaffold
	pfu_aug1.0_5662.1_23858	fork head box protein F-like	Reciprocal BLASTP best hit ...	gi|274133304|emb|CBI70345.1|	forkhead box F protein [Pat...	–	scaffold5662.1
	pfu_aug1.0_9684.1_60643	Pfu-48 related 1-2	Best hit to NP_835455 pancr...	gi|72104716|ref|XP_787068.1|	pancreas transcription fac...	–	scaffold9684.1
	pfu_aug1.0_9632.1_38937	Pfu-48 related 2	Best hit to NP_835455 pancr...	gi|242020670|ref|XP_0024307...	hypothetical protein Phum_P...	–	scaffold9632.1
	pfu_aug1.0_5392.1_45198	Pfu-ACSa1	Best hit to NP_004307 achae...	–	–	–	scaffold5392.1
	pfu_aug1.0_5392.1_45194	Pfu-ACSa2	Best hit to NP_004307 achae...	gi|439530|gb|AAA03722.1|	transcriptional regulator [...	–	scaffold5392.1
	pfu_aug1.0_8765.1_24472	Pfu-ACSb	Best hit to Q7RTU5 Achaete-...	–	–	–	scaffold8765.1
	pfu_aug1.0_3633.1_52045	Pfu-AHR	Best hit to EAW50997 hCG198...	gi|7839662|gb|AAF70378.1|AF...	aryl hydrocarbon receptor-l...	–	scaffold3633.1
	pfu_aug1.0_3633.1_52046	Pfu-AHR-related	Best hit to ACL80140 aryl h...	gi|227908937|gb|ACL80140.3|	aryl hydrocarbon receptor [...	–	scaffold3633.1
	pfu_aug1.0_1868.1_37159	Pfu-amber	Best hit to Adi-amber by a ...	gi|156370137|ref|XP_0016283...	predicted protein [Nematost...	–	scaffold1868.1
	pfu_aug1.0_4162.1_66900	Pfu-AP4	Best hit to CAA40683 transc...	gi|354488493|ref|XP_0035064...	transcription factor AP-4 ...	–	scaffold4162.1
	pfu_aug1.0_39991.1_05104	Pfu-ARNT	Best hit to AAH60838 ARNT p...	gi|95007805|dbj|BAE94239.1|	aryl hydrocarbone receptor ...	–	scaffold39991.1
	pfu_aug1.0_994.1_43872	Pfu-atonal	Best hit to AAH69578 ATOH1 ...	gi|91078386|ref|XP_974297.1|	basic helix-loop-helix tra...	–	scaffold994.1
	pfu_aug1.0_57367.1_48874	Pfu-Beta3	Best hit to BAG57349 basic ...	gi|31419015|gb|AAH53312.1|	Basic helix-loop-helix fami...	–	scaffold57367.1
	pfu_aug1.0_18654.1_47238	Pfu-bmal	Best hit to EAW68508 aryl h...	gi|3211720|gb|AAC21449.1|	TIC [Rattus norvegicus]	–	scaffold18654.1
	pfu_aug1.0_13942.1_10662	Pfu-clock-related	Best hit to AEJ87226 clock ...	gi|157132927|ref|XP_0016627...	AAEL012562-PA [Aedes aegypti]	–	scaffold13942.1
	pfu_aug1.0_1362.1_15443	Pfu-clockwork orange	Best hit to BAG64825 unname...	gi|110761895|ref|XP_0011219...	hairy/enhancer-of-split re...	–	scaffold1362.1
	pfu_aug1.0_1877.1_44167	Pfu-COE-related	Best hit to transcription f...	gi|312166114|gb|ADQ39028.1|	transcription factor COE [H...	–	scaffold1877.1
	pfu_aug1.0_6538.1_09374	Pfu-cranky	Best hit to NP_849195 neuro...	gi|157118010|ref|XP_0016589...	AAEL008129-PA [Aedes aegypti]	–	scaffold6538.1
	pfu_aug1.0_7021.1_02366	Pfu-Delilah	Best hit to EAX04750 heart ...	gi|225711932|gb|ACO11812.1|	Neurogenic differentiation ...	–	scaffold7021.1
	pfu_aug1.0_37.1_36246	Pfu-E12/E47	Best hit to AAA60310 SEF2-1...	gi|327277906|ref|XP_0032237...		–	scaffold37.1
	pfu_aug1.0_83.1_50613	Pfu-Hairy_orange domain containing 1	Best hit to CAG03204 unname...	–	–	–	scaffold83.1
	pfu_aug1.0_25206.1_11676	Pfu-Hairy_orange domain containing 3	Best hit to NP_001161564 he...	gi|269785273|ref|NP_0011615...	hey-like transcription fact...	–	scaffold25206.1
	pfu_aug1.0_2402.1_66308	Pfu-Hairy_orange domain containing 4	Best hit to XP_002738771 PR...	–	–	–	scaffold2402.1
	pfu_aug1.0_91.1_65233	Pfu-Hand	Best hit to AAD13185 basic ...	gi|154147704|ref|NP_0010936...	heart- and neural crest der...	–	scaffold91.1
	pfu_aug1.0_30743.1_26538	Pfu-HES-like1	The predicted protein showe...	–	–	–	scaffold30743.1
	pfu_aug1.0_24692.1_26195	Pfu-HES-like2	Best hit to EAW78058 hairy ...	gi|118343727|ref|NP_0010716...	transcription factor protei...	–	scaffold24692.1
	pfu_aug1.0_105.1_29100	Pfu-HES1	Best hit to NP_066993 trans...	–	–	–	scaffold105.1
	pfu_aug1.0_10927.1_53624	Pfu-HES2	Best hit to EAW78058 hairy ...	–	–	–	scaffold10927.1
	pfu_aug1.0_11631.1_24932	Pfu-HES3	Best hit to EAW78058 hairy ...	–	–	–	scaffold11631.1
	pfu_aug1.0_164384.1_28487	Pfu-HES4	Best hit to EAW78058 hairy ...	gi|47225756|emb|CAG08099.1|	unnamed protein product, pa...	–	scaffold164384.1
	pfu_aug1.0_4271.1_01686	Pfu-HES5	Best hit to EAW78058 hairy ...	gi|54292102|ref|NP_00100584...	transcription factor HES-1 ...	–	scaffold4271.1
	pfu_aug1.0_83486.1_63907	Pfu-HES6	Best hit to NP_066993 trans...	–	–	–	scaffold83486.1
	pfu_aug1.0_12059.1_24977	Pfu-HEY	Best hit to AAL06278 basic ...	gi|259013448|ref|NP_0011584...	hairy/enhancer-of-split rel...	–	scaffold12059.1
	pfu_aug1.0_20632.1_25878	Pfu-Hif-related1	Best hit to BAG65259 unname...	gi|331687645|gb|AED87588.1|	hypoxia-inducible factor 1 ...	–	scaffold20632.1
	pfu_aug1.0_85306.1_49342	Pfu-Hif-related2	Best hit to BAG65259 unname...	–	–	–	scaffold85306.1
	pfu_aug1.0_4165.1_23515	Pfu-Hif/Sim/Trh-related	Best hit to AAY14704 endoth...	–	–	–	scaffold4165.1
	pfu_aug1.0_7320.1_45633	Pfu-ID	Best hit to NP_002157 DNA-b...	gi|351712276|gb|EHB15195.1|		–	scaffold7320.1
	pfu_aug1.0_15482.1_61501	Pfu-Mad	Best hit to NP_569157 max-i...	–	–	–	scaffold15482.1
	pfu_aug1.0_9915.1_31847	Pfu-Max	Best hit to AAQ57210 MAX pr...	gi|47230248|emb|CAG10662.1|	unnamed protein product, pa...	–	scaffold9915.1
	pfu_aug1.0_522.1_22207	Pfu-MIST	Best hit to NP_803238 class...	gi|328777481|ref|XP_0032493...	class A basic helix-loop-h...	–	scaffold522.1
	pfu_aug1.0_16196.1_25497	Pfu-MITF-related1	Best hit to EAW50714 enhanc...	–	–	–	scaffold16196.1
	pfu_aug1.0_11839.1_68415	Pfu-MITF-related2	Best hit to CAI22453 transc...	gi|241715136|ref|XP_0024121...	helix-loop-helix transcript...	–	scaffold11839.1
	pfu_aug1.0_15766.1_61549	Pfu-MITF-related3	Best hit to CAI22454 transc...	–	–	–	scaffold15766.1
	pfu_aug1.0_28284.1_40713	Pfu-Mlx-related1	Best hit to AAG34121 MondoA...	–	–	–	scaffold28284.1
	pfu_aug1.0_78042.1_56561	Pfu-Mlx-related2	Best hit to AAG34121 MondoA...	gi|292614351|ref|XP_0013385...		–	scaffold78042.1
	pfu_aug1.0_34585.1_70133	Pfu-Mlx-related3	Best hit to AAH28309 MLXIP ...	gi|189237334|ref|XP_973749.2|		–	scaffold34585.1
	pfu_aug1.0_15123.1_61451	Pfu-Mnt	Best hit to NP_064706 max-b...	gi|241594851|ref|XP_0024043...	max binding protein mnt, pu...	–	scaffold15123.1
	pfu_aug1.0_4931.1_30820	Pfu-Myc	Best hit to BAG61453 unname...	gi|259013287|ref|NP_0011584...	myc proto-oncogene protein ...	–	scaffold4931.1
	pfu_aug1.0_15323.1_39685	Pfu-MyoD	Best hit to NP_005584 myoge...	gi|242017454|ref|XP_0024292...	myogenic factor, putative [...	–	scaffold15323.1
	pfu_aug1.0_12989.1_10543	Pfu-MyoRb	Best hit to Q7RTU0 RecName:...	gi|291240317|ref|XP_0027400...	transcription factor 23-li...	–	scaffold12989.1
	pfu_aug1.0_88481.1_42216	Pfu-NeuroD	Best hit to BAA36519 BETA2 ...	gi|189094802|emb|CAQ57533.1|	neurogenic differentiation ...	–	scaffold88481.1
	pfu_aug1.0_1868.1_37158	Pfu-neurogenin	Best hit to AAB37575 bHLH p...	gi|189094806|emb|CAQ57535.1|	neurogenin [Platynereis dum...	–	scaffold1868.1
	pfu_aug1.0_7893.1_38660	Pfu-NSCL	Best hit to NP_005589 helix...	gi|345491490|ref|XP_0016058...		–	scaffold7893.1
	pfu_aug1.0_61157.1_63590	Pfu-Oligo-like	Best hit to AAH34681 OLIG2 ...	gi|348517523|ref|XP_0034462...	oligodendrocyte transcript...	–	scaffold61157.1
	pfu_aug1.0_6715.1_60089	Pfu-Oligo-related	Best hit to NP_005797 oligo...	–	–	–	scaffold6715.1
	pfu_aug1.0_4032.1_44843	Pfu-orphan-HLH-a	Best hit to NP_835455 pancr...	–	–	–	scaffold4032.1
	pfu_aug1.0_91850.1_71387	Pfu-orphan-HLH-a-b	Best hit to NP_835455 pancr...	–	–	–	scaffold91850.1
	pfu_aug1.0_2172.1_58809	Pfu-orphan-HLH-b	This annotation is based on...	–	–	–	scaffold2172.1
	pfu_aug1.0_2344.1_15792	Pfu-orphan-HLH-c	Best hit to ADM47440 methop...	–	–	–	scaffold2344.1
	pfu_aug1.0_1846.1_58666	Pfu-orphan-HLH-d	Best hit to BAA19936 BMAL1c...	gi|242020804|ref|XP_0024308...	hypoxia-inducible factor 1 ...	–	scaffold1846.1
	pfu_aug1.0_3633.1_52045	Pfu-orphan-HLH-e	scaffold 2589.1; 3681...385...	gi|7839662|gb|AAF70378.1|AF...	aryl hydrocarbon receptor-l...	–	scaffold3633.1
	pfu_aug1.0_23332.1_40414	Pfu-orphan-HLH-f	scaffold 37476.1; 13170...1...	gi|301616943|ref|XP_0029379...		–	scaffold23332.1
	pfu_aug1.0_24175.1_69619	Pfu-orphan-HLH-h	Best hit to BAB83913 putati...	–	–	–	scaffold24175.1
	pfu_aug1.0_35838.1_62836	Pfu-orphan-HLH-h-b	Best hit to BAB83913 putati...	–	–	–	scaffold35838.1
	pfu_aug1.0_1629.1_00772	Pfu-orphan-HLH-j	Best hit to EAX04750 heart ...	–	–	–	scaffold1629.1
	pfu_aug1.0_2718.1_23060	Pfu-orphan-HLH-k-a	Best hit to NP_064706 max-b...	–	–	–	scaffold2718.1
	pfu_aug1.0_53878.1_34549	Pfu-orphan-HLH-k-b	The predicted amino acid se...	–	–	–	scaffold53878.1
	pfu_aug1.0_23332.1_40414	Pfu-Paraxis	Best hit to AAH67836 TCF15 ...	gi|301616943|ref|XP_0029379...		–	scaffold23332.1
	pfu_aug1.0_3465.1_01465	Pfu-pearl	Best hit to Adi-pearl with ...	–	–	–	scaffold3465.1
	pfu_aug1.0_9684.1_60643	Pfu-PTFa-like	scaf11169.1; 10131...10364 ...	gi|72104716|ref|XP_787068.1|	pancreas transcription fac...	–	scaffold9684.1
	pfu_aug1.0_24801.1_19033	Pfu-PTFa1	Best hit to AAI01137 Fer3-l...	gi|242007238|ref|XP_0024244...	protein lin-32, putative [P...	–	scaffold24801.1
	pfu_aug1.0_3558.1_08659	Pfu-PTFa2	Best hit to NP_690862 fer3-...	gi|291226431|ref|XP_0027331...	myoblast determination pro...	–	scaffold3558.1
	pfu_aug1.0_108.1_50631	Pfu-SCL	Best hit to CAA36246 tal1 [...	gi|14906481|gb|AAK72692.1|		–	scaffold108.1
	pfu_aug1.0_114087.1_21027	Pfu-Sim	Best hit to BAA07906 Sim pr...	gi|326670907|ref|XP_0031993...		–	scaffold114087.1
	pfu_aug1.0_914.1_29482	Pfu-SRC	Best hit to EAW75696 nuclea...	gi|241244650|ref|XP_0024023...	nuclear receptor coactivato...	–	scaffold914.1
	pfu_aug1.0_18185.1_32891	Pfu-SREBP	Best hit to BAG61752 unname...	gi|260832924|ref|XP_0026114...	hypothetical protein BRAFLD...	–	scaffold18185.1
	pfu_aug1.0_45771.1_12598	Pfu-SREBP-related2	Best hit to AAC50051 SREBP-...	–	–	–	scaffold45771.1
	pfu_aug1.0_505084.1_65113	Pfu-SREBP-related3	Best hit to AAH26962 Unknow...	–	–	–	scaffold505084.1
	pfu_aug1.0_8327.1_09745	Pfu-TF4	Best hit to NP_937847 max-l...	gi|260816515|ref|XP_0026030...	hypothetical protein BRAFLD...	–	scaffold8327.1
	pfu_aug1.0_3498.1_37619	Pfu-Trh-related1	Best hit to EHJ73300 trache...	gi|328712552|ref|XP_0019495...		–	scaffold3498.1
	pfu_aug1.0_31798.1_04792	Pfu-Trh-related2	Best hit to XP_002434755 ne...	gi|242000224|ref|XP_0024347...	neuronal pas domain protein...	–	scaffold31798.1
	pfu_aug1.0_2589.1_44421	Pfu-Trh-related3	Best hit to NP_001158221 ne...	–	–	–	scaffold2589.1
	pfu_aug1.0_248.1_14935	Pfu-twist1	Best hit to NP_476527 twist...	gi|327279552|ref|XP_0032245...		–	scaffold248.1
	pfu_aug1.0_4112.1_52186	Pfu-twist2	Best hit to CAA67664 B-HLH ...	gi|58585216|ref|NP_00101163...	twist [Apis mellifera]	–	scaffold4112.1
	pfu_aug1.0_19193.1_54552	Pfu-USF	Best hit to AAB24368 upstre...	gi|1022700|gb|AAA79690.1|	USF [Lytechinus variegatus]	–	scaffold19193.1

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